Trachymyrmex zeteki

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; At

Average proteome isoelectric point is 7.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 14302 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A151XJG1|A0A151XJG1_9HYME Alpha-N-acetylglucosaminidase OS=Trachymyrmex zeteki OX=64791 GN=ALC60_00464 PE=4 SV=1
MM1 pKa = 7.14VVLSSLLPPQEE12 pKa = 4.66GIRR15 pKa = 11.84HH16 pKa = 5.66EE17 pKa = 4.43EE18 pKa = 4.06PNTTVYY24 pKa = 10.78INDD27 pKa = 3.7RR28 pKa = 11.84EE29 pKa = 4.35VGKK32 pKa = 8.84GTFYY36 pKa = 10.18VTEE39 pKa = 4.5SVLSWVDD46 pKa = 2.99NDD48 pKa = 3.93TQQGFSLEE56 pKa = 4.16YY57 pKa = 10.02PHH59 pKa = 7.27ISLHH63 pKa = 6.32AISRR67 pKa = 11.84DD68 pKa = 3.7EE69 pKa = 3.97QVHH72 pKa = 5.94PRR74 pKa = 11.84QCLYY78 pKa = 10.85IMVDD82 pKa = 3.51AKK84 pKa = 11.28VDD86 pKa = 4.08LPDD89 pKa = 3.71MPLPLASEE97 pKa = 4.33NGSEE101 pKa = 4.71NDD103 pKa = 5.11DD104 pKa = 4.65DD105 pKa = 5.26NADD108 pKa = 3.7PPITEE113 pKa = 4.18MQFAPDD119 pKa = 3.43NTNNLDD125 pKa = 4.13LMFQAMSACQALHH138 pKa = 7.46PDD140 pKa = 3.96PQDD143 pKa = 3.33SFSDD147 pKa = 3.31EE148 pKa = 5.17DD149 pKa = 3.49IYY151 pKa = 11.58EE152 pKa = 4.45DD153 pKa = 4.89AEE155 pKa = 3.9EE156 pKa = 4.97DD157 pKa = 3.89YY158 pKa = 11.19EE159 pKa = 4.62GEE161 pKa = 3.98YY162 pKa = 10.9DD163 pKa = 3.93EE164 pKa = 5.7EE165 pKa = 4.62VGAGDD170 pKa = 4.78APCILPTEE178 pKa = 4.36QMGTTHH184 pKa = 7.02TGAEE188 pKa = 4.24AEE190 pKa = 4.01EE191 pKa = 4.44AMDD194 pKa = 3.59IEE196 pKa = 4.89AGQFEE201 pKa = 4.86DD202 pKa = 5.63AEE204 pKa = 4.32EE205 pKa = 4.4DD206 pKa = 3.54PP207 pKa = 5.23

Molecular weight: 23.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A151X434|A0A151X434_9HYME Bee-milk protein OS=Trachymyrmex zeteki OX=64791 GN=ALC60_06037 PE=3 SV=1
RR1 pKa = 7.84SGRR4 pKa = 11.84QAGRR8 pKa = 11.84QAGRR12 pKa = 11.84QAGRR16 pKa = 11.84QAGRR20 pKa = 11.84QAGKK24 pKa = 9.57QASKK28 pKa = 10.36QASKK32 pKa = 10.44QASKK36 pKa = 10.44QASKK40 pKa = 10.46QVSSRR45 pKa = 11.84QVVVGMTVGG54 pKa = 3.13

Molecular weight: 5.6 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14302

0

14302

6592638

18

15975

461.0

52.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.011 ± 0.02

2.067 ± 0.029

5.349 ± 0.019

6.591 ± 0.029

3.678 ± 0.014

5.249 ± 0.024

2.546 ± 0.012

6.134 ± 0.025

6.364 ± 0.028

9.024 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.299 ± 0.01

5.164 ± 0.02

4.874 ± 0.025

4.121 ± 0.021

5.949 ± 0.023

8.151 ± 0.024

6.042 ± 0.023

5.943 ± 0.015

1.073 ± 0.008

3.207 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski