Pedilanthus leaf curl virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4FUP3|D4FUP3_9GEMI AC4 protein OS=Pedilanthus leaf curl virus OX=619631 GN=ac4 PE=3 SV=1
MM1 pKa = 7.71APPKK5 pKa = 10.26RR6 pKa = 11.84FQIYY10 pKa = 10.19AKK12 pKa = 10.19NFFITYY18 pKa = 7.31PKK20 pKa = 10.51CSLTKK25 pKa = 10.66EE26 pKa = 4.11EE27 pKa = 5.14ALSQIQNLQTPVNKK41 pKa = 10.07KK42 pKa = 9.38YY43 pKa = 10.88IKK45 pKa = 9.55ICRR48 pKa = 11.84EE49 pKa = 3.47FHH51 pKa = 6.95EE52 pKa = 4.57NGEE55 pKa = 4.21PHH57 pKa = 6.62LHH59 pKa = 6.03VLIQFEE65 pKa = 4.78GKK67 pKa = 9.95YY68 pKa = 9.77KK69 pKa = 10.46CQNQRR74 pKa = 11.84FFDD77 pKa = 4.04LVSPTRR83 pKa = 11.84SAHH86 pKa = 4.86FHH88 pKa = 6.55PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.11VKK101 pKa = 11.17SYY103 pKa = 11.26LEE105 pKa = 4.24KK106 pKa = 11.19DD107 pKa = 3.24GDD109 pKa = 3.91TLDD112 pKa = 3.28WGEE115 pKa = 3.86FQIDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGQQSANDD132 pKa = 3.81AYY134 pKa = 10.71AAALNAGSKK143 pKa = 10.29SEE145 pKa = 3.84ALRR148 pKa = 11.84VIKK151 pKa = 10.21EE152 pKa = 4.18LAPKK156 pKa = 10.3DD157 pKa = 3.74YY158 pKa = 11.2VLQFHH163 pKa = 6.76NLNANLDD170 pKa = 4.31RR171 pKa = 11.84IFTPPMEE178 pKa = 4.56VYY180 pKa = 10.67VSPFSSSSFDD190 pKa = 3.41QVPEE194 pKa = 3.92EE195 pKa = 4.34LEE197 pKa = 3.73VWAAEE202 pKa = 4.18NVVDD206 pKa = 5.03AAARR210 pKa = 11.84PLRR213 pKa = 11.84PKK215 pKa = 10.65SIVLEE220 pKa = 4.37GDD222 pKa = 3.06SRR224 pKa = 11.84TGKK227 pKa = 8.52TMWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.02VYY251 pKa = 10.89SNEE254 pKa = 3.02AWYY257 pKa = 10.82NVIDD261 pKa = 5.29DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.6YY287 pKa = 10.57GKK289 pKa = 9.12PVQIKK294 pKa = 10.17GGIPAIFLCNPGPNSSYY311 pKa = 11.34KK312 pKa = 10.62EE313 pKa = 3.85FLDD316 pKa = 3.82EE317 pKa = 4.66EE318 pKa = 4.61KK319 pKa = 11.18NSALKK324 pKa = 10.53NWALKK329 pKa = 10.17NATFITLEE337 pKa = 4.26GPLYY341 pKa = 10.84SGSNQSAAQASQEE354 pKa = 3.77GDD356 pKa = 3.32QASSCC361 pKa = 3.88

Molecular weight: 40.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4FUN7|D4FUN7_9GEMI Protein V2 OS=Pedilanthus leaf curl virus OX=619631 GN=av2 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.94IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.04SPYY27 pKa = 9.79VSRR30 pKa = 11.84AAAPIVRR37 pKa = 11.84VTKK40 pKa = 10.71AKK42 pKa = 10.29AWANRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.87PRR54 pKa = 11.84MYY56 pKa = 10.68RR57 pKa = 11.84MYY59 pKa = 10.44RR60 pKa = 11.84SPDD63 pKa = 3.21VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.1SRR80 pKa = 11.84HH81 pKa = 6.13DD82 pKa = 3.26IQHH85 pKa = 6.35IGKK88 pKa = 8.97VMCVSDD94 pKa = 3.59VTRR97 pKa = 11.84GTGLTHH103 pKa = 7.09RR104 pKa = 11.84VGKK107 pKa = 9.66RR108 pKa = 11.84FCVKK112 pKa = 9.94SVYY115 pKa = 10.52VLGKK119 pKa = 9.41IWMDD123 pKa = 3.35EE124 pKa = 4.04NIKK127 pKa = 9.32TKK129 pKa = 10.6NHH131 pKa = 5.78TNSVMFFLVRR141 pKa = 11.84DD142 pKa = 3.84RR143 pKa = 11.84RR144 pKa = 11.84PVDD147 pKa = 3.13KK148 pKa = 10.28PQDD151 pKa = 3.56FGEE154 pKa = 4.33VFNMFDD160 pKa = 4.29NEE162 pKa = 4.11PSTATVKK169 pKa = 10.38NVHH172 pKa = 6.5RR173 pKa = 11.84DD174 pKa = 3.15RR175 pKa = 11.84YY176 pKa = 8.77QVLRR180 pKa = 11.84KK181 pKa = 9.41WYY183 pKa = 8.08ATVTGGQYY191 pKa = 10.85ASKK194 pKa = 10.24EE195 pKa = 3.73QALVKK200 pKa = 10.65KK201 pKa = 9.58FIRR204 pKa = 11.84VNNYY208 pKa = 7.74VVYY211 pKa = 9.96NQQEE215 pKa = 3.8AGKK218 pKa = 10.08YY219 pKa = 8.01EE220 pKa = 4.07NHH222 pKa = 6.29SEE224 pKa = 4.11NALMLYY230 pKa = 7.58MACTHH235 pKa = 7.06ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.64FYY251 pKa = 11.34DD252 pKa = 3.32SVTNN256 pKa = 3.98

Molecular weight: 29.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1184

83

361

169.1

19.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.997 ± 0.824

2.111 ± 0.43

4.476 ± 0.418

4.645 ± 0.699

4.392 ± 0.384

4.561 ± 0.42

3.885 ± 0.74

5.574 ± 1.052

5.828 ± 0.916

7.686 ± 1.234

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.28 ± 0.452

5.659 ± 0.781

5.828 ± 0.669

5.321 ± 0.817

6.503 ± 0.971

8.699 ± 1.273

5.236 ± 0.916

6.419 ± 1.374

1.436 ± 0.138

3.463 ± 0.671
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski