Gordonia phage Mollymur

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bantamvirus; unclassified Bantamvirus

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 113 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y6EAC1|A0A4Y6EAC1_9CAUD Phosphoribosyltransferase OS=Gordonia phage Mollymur OX=2590895 GN=5 PE=4 SV=1
MM1 pKa = 7.08NQGEE5 pKa = 4.44LLGRR9 pKa = 11.84ILAGMGYY16 pKa = 6.58TQHH19 pKa = 7.02SLDD22 pKa = 4.42YY23 pKa = 10.72FDD25 pKa = 5.59GSCICGWSAEE35 pKa = 4.45DD36 pKa = 4.85VPDD39 pKa = 5.62DD40 pKa = 4.28PAFDD44 pKa = 4.49DD45 pKa = 4.85LSLNEE50 pKa = 4.46LFEE53 pKa = 4.26AHH55 pKa = 6.06VGEE58 pKa = 4.7AAAA61 pKa = 5.09

Molecular weight: 6.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y6E9S2|A0A4Y6E9S2_9CAUD Uncharacterized protein OS=Gordonia phage Mollymur OX=2590895 GN=52 PE=4 SV=1
MM1 pKa = 7.83RR2 pKa = 11.84KK3 pKa = 8.51HH4 pKa = 5.49HH5 pKa = 6.17TRR7 pKa = 11.84PHH9 pKa = 6.16AARR12 pKa = 11.84GRR14 pKa = 11.84YY15 pKa = 6.83VTCEE19 pKa = 3.83CGKK22 pKa = 10.13RR23 pKa = 11.84AYY25 pKa = 7.47EE26 pKa = 3.93TRR28 pKa = 11.84KK29 pKa = 9.87DD30 pKa = 3.51AKK32 pKa = 10.38LSRR35 pKa = 11.84GTMGGSAGTGMAAYY49 pKa = 10.02RR50 pKa = 11.84CDD52 pKa = 3.72LAPASMPWHH61 pKa = 6.74LGHH64 pKa = 7.33LNKK67 pKa = 9.94KK68 pKa = 8.91SKK70 pKa = 10.35IYY72 pKa = 10.68GRR74 pKa = 11.84LL75 pKa = 3.25

Molecular weight: 8.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

113

0

113

23199

33

3010

205.3

22.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.526 ± 0.443

0.75 ± 0.126

6.686 ± 0.167

6.599 ± 0.284

2.931 ± 0.153

8.384 ± 0.353

1.918 ± 0.152

5.009 ± 0.183

3.772 ± 0.185

7.91 ± 0.195

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.358 ± 0.105

3.121 ± 0.171

5.142 ± 0.272

3.582 ± 0.22

7.289 ± 0.241

5.548 ± 0.171

6.005 ± 0.196

6.944 ± 0.197

1.892 ± 0.148

2.634 ± 0.164
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski