Dyella soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Dyella

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7160 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R0YNB1|A0A4R0YNB1_9GAMM Tetratricopeptide repeat protein OS=Dyella soli OX=522319 GN=EZM97_24255 PE=4 SV=1
MM1 pKa = 7.07SQSSTEE7 pKa = 4.04TGNLRR12 pKa = 11.84KK13 pKa = 9.17WMCVVCGFIYY23 pKa = 10.64DD24 pKa = 3.83EE25 pKa = 4.46ALGLPEE31 pKa = 4.85EE32 pKa = 5.0GIEE35 pKa = 4.88PGTRR39 pKa = 11.84WADD42 pKa = 3.54VPDD45 pKa = 3.6TWTCPDD51 pKa = 3.84CGATKK56 pKa = 10.7DD57 pKa = 3.9DD58 pKa = 4.11FEE60 pKa = 4.95MIEE63 pKa = 3.83VDD65 pKa = 3.41

Molecular weight: 7.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R0YRP0|A0A4R0YRP0_9GAMM Extracellular solute-binding protein OS=Dyella soli OX=522319 GN=EZM97_28425 PE=4 SV=1
MM1 pKa = 7.17TPAAPKK7 pKa = 9.87KK8 pKa = 10.37ARR10 pKa = 11.84AKK12 pKa = 10.38KK13 pKa = 10.04KK14 pKa = 10.0SAPAKK19 pKa = 9.75KK20 pKa = 9.88AAPAKK25 pKa = 9.91KK26 pKa = 9.62AAKK29 pKa = 9.86KK30 pKa = 9.96AVKK33 pKa = 8.72KK34 pKa = 7.73TAKK37 pKa = 9.74KK38 pKa = 9.93AAAKK42 pKa = 9.85KK43 pKa = 8.81VAKK46 pKa = 10.1KK47 pKa = 10.18AVKK50 pKa = 9.99KK51 pKa = 10.34AVKK54 pKa = 8.99KK55 pKa = 7.97TVKK58 pKa = 10.03KK59 pKa = 10.33AAAKK63 pKa = 9.83KK64 pKa = 8.68VAKK67 pKa = 10.25KK68 pKa = 10.17AVKK71 pKa = 9.7KK72 pKa = 10.37AAAKK76 pKa = 9.98KK77 pKa = 8.85VAKK80 pKa = 9.98KK81 pKa = 9.49VAKK84 pKa = 10.22KK85 pKa = 10.11AVKK88 pKa = 9.97KK89 pKa = 10.13GARR92 pKa = 11.84KK93 pKa = 9.14AVKK96 pKa = 9.61KK97 pKa = 10.55AVAKK101 pKa = 10.29RR102 pKa = 11.84VAKK105 pKa = 10.19KK106 pKa = 9.71VARR109 pKa = 11.84KK110 pKa = 8.99AVKK113 pKa = 9.79KK114 pKa = 10.33AVARR118 pKa = 11.84KK119 pKa = 8.19VAKK122 pKa = 9.96KK123 pKa = 10.45VSSKK127 pKa = 9.26KK128 pKa = 7.16TAKK131 pKa = 9.71KK132 pKa = 9.48AAVRR136 pKa = 11.84KK137 pKa = 8.64VAKK140 pKa = 10.08KK141 pKa = 10.11VAGKK145 pKa = 9.9KK146 pKa = 8.87AAKK149 pKa = 9.32AVKK152 pKa = 10.04RR153 pKa = 11.84STASKK158 pKa = 9.94KK159 pKa = 10.67AGVKK163 pKa = 9.65KK164 pKa = 10.4AVRR167 pKa = 11.84KK168 pKa = 8.79VAKK171 pKa = 8.78KK172 pKa = 6.66TARR175 pKa = 11.84RR176 pKa = 11.84KK177 pKa = 9.68

Molecular weight: 18.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7160

0

7160

2409684

30

5691

336.5

36.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.297 ± 0.038

0.83 ± 0.009

5.774 ± 0.021

5.061 ± 0.03

3.448 ± 0.016

8.464 ± 0.032

2.479 ± 0.015

4.328 ± 0.023

2.997 ± 0.023

10.638 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.405 ± 0.015

2.691 ± 0.024

5.201 ± 0.024

3.854 ± 0.02

7.158 ± 0.033

5.608 ± 0.027

5.144 ± 0.03

7.577 ± 0.027

1.575 ± 0.013

2.472 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski