Capybara microvirus Cap3_SP_347

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5P7|A0A4P8W5P7_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_347 OX=2585433 PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 10.13KK3 pKa = 9.81FQKK6 pKa = 10.29FPPDD10 pKa = 3.32GNVIIPSINSFEE22 pKa = 4.29ASFNADD28 pKa = 2.58GSVTFVPYY36 pKa = 10.21SAPSPFIASDD46 pKa = 3.3VDD48 pKa = 3.85IPSLLIAGITPQSSHH63 pKa = 6.01EE64 pKa = 4.15MEE66 pKa = 4.41LTPVDD71 pKa = 4.29SLSSLQQFEE80 pKa = 5.17HH81 pKa = 6.68EE82 pKa = 4.25FDD84 pKa = 3.54NFKK87 pKa = 11.09SS88 pKa = 3.53

Molecular weight: 9.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4W7|A0A4P8W4W7_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_347 OX=2585433 PE=4 SV=1
MM1 pKa = 7.61ANYY4 pKa = 9.37FKK6 pKa = 11.17LFLIYY11 pKa = 10.65LIYY14 pKa = 10.16FYY16 pKa = 10.59LYY18 pKa = 10.87SLFIYY23 pKa = 10.11SPHH26 pKa = 7.01RR27 pKa = 11.84AGGCLGGSLILDD39 pKa = 4.4FSHH42 pKa = 7.49LSIIPILFFYY52 pKa = 7.86YY53 pKa = 9.2FCYY56 pKa = 10.18FIFIFFYY63 pKa = 10.42FCIVKK68 pKa = 10.09II69 pKa = 4.0

Molecular weight: 8.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1724

69

610

287.3

33.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.162 ± 1.798

1.856 ± 0.512

7.077 ± 0.814

4.118 ± 0.719

7.831 ± 1.741

4.756 ± 0.637

3.248 ± 1.024

5.51 ± 0.668

6.032 ± 0.715

9.687 ± 0.785

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.03 ± 0.159

6.265 ± 0.688

3.712 ± 0.67

3.132 ± 0.692

3.48 ± 0.464

9.397 ± 1.167

4.06 ± 0.31

5.394 ± 0.704

0.58 ± 0.171

6.671 ± 1.446
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski