Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_347

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.223AlaAla: 5.223 ± 3.774
0.58AlaCys: 0.58 ± 0.471
4.063AlaAsp: 4.063 ± 0.742
2.322AlaGlu: 2.322 ± 1.646
2.902AlaPhe: 2.902 ± 1.703
5.804AlaGly: 5.804 ± 1.592
0.58AlaHis: 0.58 ± 0.461
1.741AlaIle: 1.741 ± 1.087
1.161AlaLys: 1.161 ± 0.43
4.063AlaLeu: 4.063 ± 1.147
1.741AlaMet: 1.741 ± 0.88
2.322AlaAsn: 2.322 ± 1.362
2.322AlaPro: 2.322 ± 1.296
4.063AlaGln: 4.063 ± 3.557
1.161AlaArg: 1.161 ± 0.59
5.223AlaSer: 5.223 ± 2.431
1.161AlaThr: 1.161 ± 0.59
3.482AlaVal: 3.482 ± 0.835
0.58AlaTrp: 0.58 ± 0.461
1.161AlaTyr: 1.161 ± 0.596
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.58CysAsp: 0.58 ± 0.461
0.58CysGlu: 0.58 ± 0.461
1.161CysPhe: 1.161 ± 0.941
0.58CysGly: 0.58 ± 0.471
0.58CysHis: 0.58 ± 0.461
0.58CysIle: 0.58 ± 0.902
2.322CysLys: 2.322 ± 0.556
2.902CysLeu: 2.902 ± 0.937
0.0CysMet: 0.0 ± 0.0
2.322CysAsn: 2.322 ± 1.208
0.0CysPro: 0.0 ± 0.0
1.741CysGln: 1.741 ± 1.382
1.741CysArg: 1.741 ± 1.412
0.58CysSer: 0.58 ± 0.461
0.0CysThr: 0.0 ± 0.0
0.58CysVal: 0.58 ± 0.597
0.58CysTrp: 0.58 ± 0.461
1.741CysTyr: 1.741 ± 1.272
0.0CysXaa: 0.0 ± 0.0
Asp
2.902AspAla: 2.902 ± 1.646
1.161AspCys: 1.161 ± 0.941
3.482AspAsp: 3.482 ± 1.429
2.902AspGlu: 2.902 ± 1.162
11.027AspPhe: 11.027 ± 3.146
4.063AspGly: 4.063 ± 1.951
0.58AspHis: 0.58 ± 0.461
5.804AspIle: 5.804 ± 2.464
2.902AspLys: 2.902 ± 1.646
3.482AspLeu: 3.482 ± 2.194
1.741AspMet: 1.741 ± 0.757
5.804AspAsn: 5.804 ± 2.568
0.0AspPro: 0.0 ± 0.0
1.161AspGln: 1.161 ± 0.922
2.322AspArg: 2.322 ± 1.177
5.804AspSer: 5.804 ± 0.877
3.482AspThr: 3.482 ± 1.383
4.643AspVal: 4.643 ± 0.791
0.58AspTrp: 0.58 ± 0.59
6.965AspTyr: 6.965 ± 2.85
0.0AspXaa: 0.0 ± 0.0
Glu
2.902GluAla: 2.902 ± 1.081
2.322GluCys: 2.322 ± 0.533
2.322GluAsp: 2.322 ± 1.303
0.58GluGlu: 0.58 ± 0.461
1.741GluPhe: 1.741 ± 1.029
2.322GluGly: 2.322 ± 0.851
2.902GluHis: 2.902 ± 1.054
1.161GluIle: 1.161 ± 0.596
2.322GluLys: 2.322 ± 0.851
5.223GluLeu: 5.223 ± 2.169
2.902GluMet: 2.902 ± 0.925
1.741GluAsn: 1.741 ± 0.88
0.0GluPro: 0.0 ± 0.0
1.161GluGln: 1.161 ± 0.922
1.161GluArg: 1.161 ± 0.596
2.902GluSer: 2.902 ± 2.22
1.741GluThr: 1.741 ± 1.087
2.902GluVal: 2.902 ± 1.162
0.0GluTrp: 0.0 ± 0.0
2.902GluTyr: 2.902 ± 0.941
0.0GluXaa: 0.0 ± 0.0
Phe
2.902PheAla: 2.902 ± 1.192
2.902PheCys: 2.902 ± 1.598
5.804PheAsp: 5.804 ± 1.218
2.902PheGlu: 2.902 ± 1.83
4.063PhePhe: 4.063 ± 1.878
5.223PheGly: 5.223 ± 0.906
1.741PheHis: 1.741 ± 1.098
5.804PheIle: 5.804 ± 2.686
5.804PheLys: 5.804 ± 0.932
6.384PheLeu: 6.384 ± 1.252
1.161PheMet: 1.161 ± 0.929
4.063PheAsn: 4.063 ± 1.404
1.741PhePro: 1.741 ± 0.918
1.161PheGln: 1.161 ± 0.838
4.643PheArg: 4.643 ± 2.316
6.384PheSer: 6.384 ± 3.168
2.902PheThr: 2.902 ± 0.976
4.643PheVal: 4.643 ± 1.962
0.0PheTrp: 0.0 ± 0.0
7.545PheTyr: 7.545 ± 2.33
0.0PheXaa: 0.0 ± 0.0
Gly
2.322GlyAla: 2.322 ± 1.181
1.161GlyCys: 1.161 ± 0.853
2.902GlyAsp: 2.902 ± 1.192
1.161GlyGlu: 1.161 ± 0.43
4.643GlyPhe: 4.643 ± 1.152
2.322GlyGly: 2.322 ± 1.994
1.161GlyHis: 1.161 ± 0.941
2.902GlyIle: 2.902 ± 1.081
0.58GlyLys: 0.58 ± 0.461
5.223GlyLeu: 5.223 ± 1.987
1.741GlyMet: 1.741 ± 0.327
3.482GlyAsn: 3.482 ± 1.611
0.0GlyPro: 0.0 ± 0.0
0.58GlyGln: 0.58 ± 0.461
0.58GlyArg: 0.58 ± 0.461
8.706GlySer: 8.706 ± 2.42
1.741GlyThr: 1.741 ± 1.087
2.322GlyVal: 2.322 ± 1.203
0.0GlyTrp: 0.0 ± 0.0
4.063GlyTyr: 4.063 ± 0.781
0.0GlyXaa: 0.0 ± 0.0
His
0.58HisAla: 0.58 ± 0.461
1.741HisCys: 1.741 ± 0.775
0.58HisAsp: 0.58 ± 0.471
2.322HisGlu: 2.322 ± 1.921
3.482HisPhe: 3.482 ± 1.515
0.58HisGly: 0.58 ± 0.597
0.0HisHis: 0.0 ± 0.0
1.161HisIle: 1.161 ± 0.922
3.482HisLys: 3.482 ± 1.258
4.643HisLeu: 4.643 ± 2.282
0.0HisMet: 0.0 ± 0.0
3.482HisAsn: 3.482 ± 1.114
1.741HisPro: 1.741 ± 0.757
0.0HisGln: 0.0 ± 0.0
1.741HisArg: 1.741 ± 0.812
0.58HisSer: 0.58 ± 0.597
1.741HisThr: 1.741 ± 0.757
0.58HisVal: 0.58 ± 0.461
0.0HisTrp: 0.0 ± 0.0
4.063HisTyr: 4.063 ± 2.155
0.0HisXaa: 0.0 ± 0.0
Ile
4.063IleAla: 4.063 ± 1.409
0.0IleCys: 0.0 ± 0.0
2.322IleAsp: 2.322 ± 1.177
4.063IleGlu: 4.063 ± 1.404
3.482IlePhe: 3.482 ± 1.968
2.902IleGly: 2.902 ± 0.927
2.322IleHis: 2.322 ± 0.81
2.322IleIle: 2.322 ± 1.903
3.482IleLys: 3.482 ± 1.429
5.223IleLeu: 5.223 ± 1.494
1.161IleMet: 1.161 ± 0.869
4.063IleAsn: 4.063 ± 1.172
3.482IlePro: 3.482 ± 2.072
1.741IleGln: 1.741 ± 0.327
2.902IleArg: 2.902 ± 1.426
2.902IleSer: 2.902 ± 1.449
2.322IleThr: 2.322 ± 0.862
3.482IleVal: 3.482 ± 1.431
0.0IleTrp: 0.0 ± 0.0
2.902IleTyr: 2.902 ± 2.527
0.0IleXaa: 0.0 ± 0.0
Lys
0.58LysAla: 0.58 ± 0.461
1.161LysCys: 1.161 ± 0.941
4.643LysAsp: 4.643 ± 1.66
2.902LysGlu: 2.902 ± 1.449
5.804LysPhe: 5.804 ± 1.514
3.482LysGly: 3.482 ± 0.655
3.482LysHis: 3.482 ± 1.291
3.482LysIle: 3.482 ± 1.012
2.902LysLys: 2.902 ± 1.081
3.482LysLeu: 3.482 ± 1.142
1.161LysMet: 1.161 ± 0.594
4.063LysAsn: 4.063 ± 2.233
3.482LysPro: 3.482 ± 0.896
3.482LysGln: 3.482 ± 1.039
0.58LysArg: 0.58 ± 0.471
5.223LysSer: 5.223 ± 1.645
3.482LysThr: 3.482 ± 1.069
4.063LysVal: 4.063 ± 1.45
0.0LysTrp: 0.0 ± 0.0
2.902LysTyr: 2.902 ± 0.487
0.0LysXaa: 0.0 ± 0.0
Leu
6.384LeuAla: 6.384 ± 2.574
1.161LeuCys: 1.161 ± 0.43
5.804LeuAsp: 5.804 ± 2.129
4.063LeuGlu: 4.063 ± 1.376
9.286LeuPhe: 9.286 ± 2.869
5.223LeuGly: 5.223 ± 1.605
2.322LeuHis: 2.322 ± 1.177
6.384LeuIle: 6.384 ± 2.485
4.063LeuLys: 4.063 ± 1.404
8.125LeuLeu: 8.125 ± 1.135
1.741LeuMet: 1.741 ± 0.747
5.804LeuAsn: 5.804 ± 1.596
5.223LeuPro: 5.223 ± 1.97
1.161LeuGln: 1.161 ± 0.838
3.482LeuArg: 3.482 ± 1.515
11.608LeuSer: 11.608 ± 0.851
4.063LeuThr: 4.063 ± 0.742
4.643LeuVal: 4.643 ± 2.417
0.0LeuTrp: 0.0 ± 0.0
6.384LeuTyr: 6.384 ± 1.5
0.0LeuXaa: 0.0 ± 0.0
Met
2.322MetAla: 2.322 ± 1.362
0.0MetCys: 0.0 ± 0.0
1.741MetAsp: 1.741 ± 0.775
0.58MetGlu: 0.58 ± 0.87
1.741MetPhe: 1.741 ± 0.757
0.0MetGly: 0.0 ± 0.0
0.58MetHis: 0.58 ± 0.471
0.58MetIle: 0.58 ± 0.597
2.322MetLys: 2.322 ± 1.001
1.161MetLeu: 1.161 ± 0.596
0.58MetMet: 0.58 ± 0.471
1.161MetAsn: 1.161 ± 0.43
0.58MetPro: 0.58 ± 0.471
0.0MetGln: 0.0 ± 0.0
1.161MetArg: 1.161 ± 0.43
1.161MetSer: 1.161 ± 0.43
0.58MetThr: 0.58 ± 0.461
2.902MetVal: 2.902 ± 0.941
0.58MetTrp: 0.58 ± 0.59
0.58MetTyr: 0.58 ± 0.461
0.0MetXaa: 0.0 ± 0.0
Asn
2.322AsnAla: 2.322 ± 0.739
1.161AsnCys: 1.161 ± 0.922
5.804AsnAsp: 5.804 ± 1.959
2.902AsnGlu: 2.902 ± 1.426
2.322AsnPhe: 2.322 ± 1.148
4.643AsnGly: 4.643 ± 1.899
0.58AsnHis: 0.58 ± 0.461
2.322AsnIle: 2.322 ± 0.861
4.643AsnLys: 4.643 ± 1.133
7.545AsnLeu: 7.545 ± 1.146
0.58AsnMet: 0.58 ± 0.59
5.804AsnAsn: 5.804 ± 1.953
0.58AsnPro: 0.58 ± 0.59
1.161AsnGln: 1.161 ± 1.179
2.322AsnArg: 2.322 ± 0.533
5.804AsnSer: 5.804 ± 1.101
4.643AsnThr: 4.643 ± 1.066
4.643AsnVal: 4.643 ± 0.653
0.58AsnTrp: 0.58 ± 0.471
2.322AsnTyr: 2.322 ± 0.866
0.0AsnXaa: 0.0 ± 0.0
Pro
1.161ProAla: 1.161 ± 0.596
0.58ProCys: 0.58 ± 0.471
4.643ProAsp: 4.643 ± 0.731
2.322ProGlu: 2.322 ± 0.533
2.322ProPhe: 2.322 ± 1.208
1.161ProGly: 1.161 ± 0.596
1.161ProHis: 1.161 ± 0.997
2.902ProIle: 2.902 ± 1.737
0.58ProLys: 0.58 ± 0.471
5.804ProLeu: 5.804 ± 2.499
0.58ProMet: 0.58 ± 0.471
1.741ProAsn: 1.741 ± 1.087
0.58ProPro: 0.58 ± 0.87
1.741ProGln: 1.741 ± 1.036
0.0ProArg: 0.0 ± 0.0
4.063ProSer: 4.063 ± 2.832
1.741ProThr: 1.741 ± 0.975
1.161ProVal: 1.161 ± 1.182
0.0ProTrp: 0.0 ± 0.0
2.902ProTyr: 2.902 ± 1.136
0.0ProXaa: 0.0 ± 0.0
Gln
1.161GlnAla: 1.161 ± 1.179
0.0GlnCys: 0.0 ± 0.0
2.322GlnAsp: 2.322 ± 1.843
0.58GlnGlu: 0.58 ± 0.59
1.741GlnPhe: 1.741 ± 1.103
0.58GlnGly: 0.58 ± 0.461
0.58GlnHis: 0.58 ± 0.461
2.902GlnIle: 2.902 ± 1.646
2.322GlnLys: 2.322 ± 1.206
2.322GlnLeu: 2.322 ± 0.861
0.58GlnMet: 0.58 ± 0.461
3.482GlnAsn: 3.482 ± 1.339
1.741GlnPro: 1.741 ± 1.382
1.741GlnGln: 1.741 ± 0.918
0.58GlnArg: 0.58 ± 0.59
4.063GlnSer: 4.063 ± 0.996
1.161GlnThr: 1.161 ± 0.59
1.741GlnVal: 1.741 ± 0.897
1.161GlnTrp: 1.161 ± 0.922
0.58GlnTyr: 0.58 ± 0.461
0.0GlnXaa: 0.0 ± 0.0
Arg
2.902ArgAla: 2.902 ± 1.125
0.0ArgCys: 0.0 ± 0.0
2.322ArgAsp: 2.322 ± 0.556
0.58ArgGlu: 0.58 ± 0.59
4.063ArgPhe: 4.063 ± 0.699
1.741ArgGly: 1.741 ± 0.88
1.741ArgHis: 1.741 ± 0.629
0.58ArgIle: 0.58 ± 0.471
1.161ArgLys: 1.161 ± 0.941
5.223ArgLeu: 5.223 ± 2.048
0.58ArgMet: 0.58 ± 0.471
2.902ArgAsn: 2.902 ± 1.426
1.741ArgPro: 1.741 ± 0.775
1.741ArgGln: 1.741 ± 0.897
0.58ArgArg: 0.58 ± 0.461
1.741ArgSer: 1.741 ± 0.775
2.322ArgThr: 2.322 ± 1.042
1.161ArgVal: 1.161 ± 0.941
0.58ArgTrp: 0.58 ± 0.461
1.161ArgTyr: 1.161 ± 0.748
0.0ArgXaa: 0.0 ± 0.0
Ser
4.063SerAla: 4.063 ± 2.121
0.0SerCys: 0.0 ± 0.0
6.965SerAsp: 6.965 ± 0.838
6.384SerGlu: 6.384 ± 2.964
5.223SerPhe: 5.223 ± 1.975
1.741SerGly: 1.741 ± 0.88
3.482SerHis: 3.482 ± 1.426
6.965SerIle: 6.965 ± 1.28
5.804SerLys: 5.804 ± 0.974
11.027SerLeu: 11.027 ± 2.679
2.322SerMet: 2.322 ± 1.338
2.322SerAsn: 2.322 ± 0.851
5.804SerPro: 5.804 ± 1.753
3.482SerGln: 3.482 ± 1.291
2.322SerArg: 2.322 ± 0.861
12.188SerSer: 12.188 ± 4.743
2.322SerThr: 2.322 ± 0.851
5.223SerVal: 5.223 ± 1.345
0.58SerTrp: 0.58 ± 0.471
5.804SerTyr: 5.804 ± 1.959
0.0SerXaa: 0.0 ± 0.0
Thr
4.063ThrAla: 4.063 ± 1.894
0.58ThrCys: 0.58 ± 0.461
3.482ThrAsp: 3.482 ± 0.513
1.161ThrGlu: 1.161 ± 0.59
2.322ThrPhe: 2.322 ± 0.739
2.902ThrGly: 2.902 ± 1.801
2.322ThrHis: 2.322 ± 1.208
1.161ThrIle: 1.161 ± 0.664
4.643ThrLys: 4.643 ± 1.152
2.322ThrLeu: 2.322 ± 1.303
0.0ThrMet: 0.0 ± 0.0
0.58ThrAsn: 0.58 ± 0.471
2.322ThrPro: 2.322 ± 1.81
1.741ThrGln: 1.741 ± 0.88
0.58ThrArg: 0.58 ± 0.59
4.643ThrSer: 4.643 ± 1.066
0.58ThrThr: 0.58 ± 0.461
2.322ThrVal: 2.322 ± 1.181
0.0ThrTrp: 0.0 ± 0.0
2.902ThrTyr: 2.902 ± 0.574
0.0ThrXaa: 0.0 ± 0.0
Val
1.741ValAla: 1.741 ± 1.769
1.741ValCys: 1.741 ± 1.098
4.063ValAsp: 4.063 ± 2.418
1.741ValGlu: 1.741 ± 0.757
4.063ValPhe: 4.063 ± 2.593
1.741ValGly: 1.741 ± 1.088
3.482ValHis: 3.482 ± 2.196
1.741ValIle: 1.741 ± 1.036
4.643ValLys: 4.643 ± 0.982
3.482ValLeu: 3.482 ± 1.039
1.161ValMet: 1.161 ± 0.868
2.902ValAsn: 2.902 ± 0.976
4.643ValPro: 4.643 ± 1.391
1.741ValGln: 1.741 ± 0.757
4.643ValArg: 4.643 ± 1.916
4.643ValSer: 4.643 ± 1.152
2.902ValThr: 2.902 ± 1.524
0.58ValVal: 0.58 ± 0.471
0.0ValTrp: 0.0 ± 0.0
2.322ValTyr: 2.322 ± 1.883
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.58TrpCys: 0.58 ± 0.471
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.58TrpPhe: 0.58 ± 0.461
0.0TrpGly: 0.0 ± 0.0
0.58TrpHis: 0.58 ± 0.461
0.0TrpIle: 0.0 ± 0.0
0.58TrpLys: 0.58 ± 0.461
0.58TrpLeu: 0.58 ± 0.461
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.58TrpGln: 0.58 ± 0.59
0.0TrpArg: 0.0 ± 0.0
0.58TrpSer: 0.58 ± 0.59
0.58TrpThr: 0.58 ± 0.461
0.58TrpVal: 0.58 ± 0.471
0.0TrpTrp: 0.0 ± 0.0
0.58TrpTyr: 0.58 ± 0.461
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.063TyrAla: 4.063 ± 1.113
1.741TyrCys: 1.741 ± 0.757
6.965TyrAsp: 6.965 ± 2.235
1.161TyrGlu: 1.161 ± 0.941
6.384TyrPhe: 6.384 ± 4.6
0.58TyrGly: 0.58 ± 0.461
2.322TyrHis: 2.322 ± 1.208
4.643TyrIle: 4.643 ± 1.929
4.643TyrLys: 4.643 ± 3.115
8.706TyrLeu: 8.706 ± 2.677
0.0TyrMet: 0.0 ± 0.0
4.643TyrAsn: 4.643 ± 1.447
1.161TyrPro: 1.161 ± 0.59
1.161TyrGln: 1.161 ± 0.59
2.322TyrArg: 2.322 ± 0.533
5.223TyrSer: 5.223 ± 1.89
1.161TyrThr: 1.161 ± 0.941
2.322TyrVal: 2.322 ± 0.861
0.58TyrTrp: 0.58 ± 0.461
6.965TyrTyr: 6.965 ± 3.764
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1724 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski