Trinickia dinghuensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Trinickia

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6498 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3D8JQC6|A0A3D8JQC6_9BURK Protein translocase subunit SecD OS=Trinickia dinghuensis OX=2291023 GN=secD PE=3 SV=1
MM1 pKa = 7.5KK2 pKa = 10.23LAASLSKK9 pKa = 10.8LFAAMRR15 pKa = 11.84ASEE18 pKa = 4.31TSGRR22 pKa = 11.84TQYY25 pKa = 11.54AAVPAPLIVALEE37 pKa = 3.82PRR39 pKa = 11.84IVYY42 pKa = 9.28DD43 pKa = 4.48ASAASIGMAAAVAAQHH59 pKa = 5.67HH60 pKa = 6.32HH61 pKa = 6.65ASAEE65 pKa = 4.03AHH67 pKa = 6.68DD68 pKa = 4.79AATPAAVSNSAASAGRR84 pKa = 11.84SAAFSVSSSDD94 pKa = 3.16AAASQRR100 pKa = 11.84AVHH103 pKa = 6.91GYY105 pKa = 7.26MTAQSSTGIGAGDD118 pKa = 3.99TSTMRR123 pKa = 11.84AVHH126 pKa = 7.03GYY128 pKa = 8.23TDD130 pKa = 4.25LAVTSADD137 pKa = 3.46KK138 pKa = 10.97QVVFVNSNVTDD149 pKa = 3.85YY150 pKa = 11.02QALIAGVPQGTQVVILDD167 pKa = 3.74STKK170 pKa = 11.11DD171 pKa = 3.47GLSQMEE177 pKa = 4.68QYY179 pKa = 10.23LQQHH183 pKa = 6.71PGVSAIHH190 pKa = 5.92LVSHH194 pKa = 6.63GADD197 pKa = 3.1GDD199 pKa = 4.1FEE201 pKa = 5.64IGSTWINEE209 pKa = 4.2ADD211 pKa = 3.64LSTYY215 pKa = 10.18SAQLAQIGAAMKK227 pKa = 10.27PGGDD231 pKa = 3.67FLIYY235 pKa = 10.61GCDD238 pKa = 3.26VAEE241 pKa = 4.39NADD244 pKa = 3.55GKK246 pKa = 11.22ALVQQIASITGLNVAASTDD265 pKa = 3.21ITGAASLGGDD275 pKa = 3.06WTLEE279 pKa = 3.76YY280 pKa = 10.96DD281 pKa = 3.84VGNVHH286 pKa = 6.46TNVIFSAAAEE296 pKa = 4.0KK297 pKa = 10.81SYY299 pKa = 11.07DD300 pKa = 3.59YY301 pKa = 10.92TLALIDD307 pKa = 4.22EE308 pKa = 5.24NYY310 pKa = 10.17DD311 pKa = 3.32SHH313 pKa = 9.13VGFDD317 pKa = 3.36TGGTGVSSTTLDD329 pKa = 3.13GLTYY333 pKa = 10.56TGDD336 pKa = 3.44QPVEE340 pKa = 4.01YY341 pKa = 9.74QVVSGSLPNSATGGEE356 pKa = 4.32LVVNTQGTAMSTMTVSRR373 pKa = 11.84ADD375 pKa = 3.49GSLMAVQSFDD385 pKa = 3.38IDD387 pKa = 3.19IFLSNDD393 pKa = 3.01VTVQAIGSSGQVLGSIDD410 pKa = 5.01LNLNDD415 pKa = 4.16GASTNTYY422 pKa = 10.56DD423 pKa = 4.17AGHH426 pKa = 6.45SSGTSLFHH434 pKa = 7.62VNLTSLAAFSQVKK447 pKa = 9.87SIKK450 pKa = 10.42FIEE453 pKa = 4.16NSGNGTYY460 pKa = 10.89LSPTLDD466 pKa = 3.1NFTYY470 pKa = 10.83LDD472 pKa = 3.77PTSPPTLTASGGTASFTAADD492 pKa = 4.0NAASTPVVVDD502 pKa = 3.65PGITLTDD509 pKa = 3.91GNSATATSATVTITGNFQAGEE530 pKa = 4.02DD531 pKa = 3.44QLAFINNNSTTYY543 pKa = 11.26GNIANGSYY551 pKa = 10.34NPSSGVLTLNGTASITQWQAALSAVTYY578 pKa = 9.57TDD580 pKa = 3.19TAVTPNTAMRR590 pKa = 11.84TVSFEE595 pKa = 3.98LTSDD599 pKa = 3.51GFTPSNTVTRR609 pKa = 11.84TVTVADD615 pKa = 3.82TDD617 pKa = 3.55QTPIVHH623 pKa = 5.5TTGGTTSYY631 pKa = 11.76ADD633 pKa = 3.29GTSAVTIDD641 pKa = 3.55SGVTVTDD648 pKa = 4.79LDD650 pKa = 3.75NTTQASGTVSISAGFQSGDD669 pKa = 3.5TLSFTANSSTMGNIAIQSYY688 pKa = 10.58NSATGVLSLTSASALATKK706 pKa = 9.74AQWAAALSAVKK717 pKa = 10.47FSSTSTTYY725 pKa = 11.2GNRR728 pKa = 11.84TISFTTNDD736 pKa = 3.44GTQTSAAATDD746 pKa = 3.82TVDD749 pKa = 4.15VVNPLQLTTDD759 pKa = 3.34SGSAAFVAGDD769 pKa = 3.84NVTSTPVAVDD779 pKa = 3.17SGLTLTDD786 pKa = 3.42AATGTLSSVTVAITGNFDD804 pKa = 3.34SSHH807 pKa = 6.98DD808 pKa = 3.58QLQFTNTGSITGSYY822 pKa = 10.6SSATGVLTLTGASATLTQWQSALQSVTFEE851 pKa = 4.21NTAVTPSNVPRR862 pKa = 11.84TVTFTAVDD870 pKa = 3.67SLTNTSTATRR880 pKa = 11.84TVTVTDD886 pKa = 3.55TDD888 pKa = 3.38QTPIVTTTGGTTNYY902 pKa = 10.22VGGTSGVTIDD912 pKa = 4.26SGVGG916 pKa = 3.08

Molecular weight: 92.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3D8K1U8|A0A3D8K1U8_9BURK Acetolactate synthase large subunit OS=Trinickia dinghuensis OX=2291023 GN=DWV00_11390 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 8.74TAGGRR28 pKa = 11.84KK29 pKa = 9.04VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.65GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LAII44 pKa = 4.0

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6498

0

6498

2122929

24

3980

326.7

35.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.839 ± 0.042

0.959 ± 0.011

5.435 ± 0.022

5.274 ± 0.034

3.674 ± 0.019

8.213 ± 0.034

2.33 ± 0.015

4.688 ± 0.022

3.027 ± 0.024

10.075 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.346 ± 0.015

2.736 ± 0.019

5.064 ± 0.024

3.48 ± 0.022

7.039 ± 0.038

5.9 ± 0.033

5.447 ± 0.032

7.691 ± 0.024

1.341 ± 0.013

2.443 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski