Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola vulgatus

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3982 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A6L3C7|A6L3C7_BACV8 Uncharacterized protein OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154) OX=435590 GN=BVU_2534 PE=4 SV=1
MM1 pKa = 7.28EE2 pKa = 5.61AVTLSEE8 pKa = 3.54ARR10 pKa = 11.84VYY12 pKa = 10.88VGTYY16 pKa = 9.56NKK18 pKa = 10.08YY19 pKa = 10.6NNGSLFGKK27 pKa = 9.26WLDD30 pKa = 3.72LSDD33 pKa = 5.06YY34 pKa = 10.69SDD36 pKa = 3.45KK37 pKa = 11.77DD38 pKa = 3.52EE39 pKa = 4.48FLEE42 pKa = 4.84ACRR45 pKa = 11.84EE46 pKa = 4.05LHH48 pKa = 6.85KK49 pKa = 11.19DD50 pKa = 3.48EE51 pKa = 5.31EE52 pKa = 4.7DD53 pKa = 3.94PEE55 pKa = 5.94LMFQDD60 pKa = 3.85IEE62 pKa = 4.54NIPEE66 pKa = 4.03ALISEE71 pKa = 4.51SWLSDD76 pKa = 2.93KK77 pKa = 10.81FFEE80 pKa = 5.53LRR82 pKa = 11.84DD83 pKa = 4.26AIEE86 pKa = 4.48KK87 pKa = 10.62LSEE90 pKa = 4.15TEE92 pKa = 3.79QEE94 pKa = 5.56AFFVWCDD101 pKa = 3.32HH102 pKa = 6.55HH103 pKa = 8.25NSDD106 pKa = 5.34ISEE109 pKa = 4.05EE110 pKa = 4.1DD111 pKa = 3.33ADD113 pKa = 4.29DD114 pKa = 4.21LVSSFEE120 pKa = 4.54DD121 pKa = 4.35EE122 pKa = 4.35YY123 pKa = 11.27QGEE126 pKa = 4.44YY127 pKa = 10.22KK128 pKa = 10.73DD129 pKa = 4.14EE130 pKa = 3.79EE131 pKa = 5.05DD132 pKa = 3.37YY133 pKa = 11.06AYY135 pKa = 10.1EE136 pKa = 4.09IVEE139 pKa = 4.15EE140 pKa = 5.11CYY142 pKa = 10.75DD143 pKa = 3.68LPEE146 pKa = 4.02FAKK149 pKa = 10.18TYY151 pKa = 10.45FDD153 pKa = 3.79YY154 pKa = 11.39SAFARR159 pKa = 11.84DD160 pKa = 5.2LFMTDD165 pKa = 2.67YY166 pKa = 11.06WMDD169 pKa = 3.08NGFVFRR175 pKa = 11.84CAA177 pKa = 3.58

Molecular weight: 21.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A6KYZ6|A6KYZ6_BACV8 Mobilisation protein C OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154) OX=435590 GN=BVU_0965 PE=4 SV=1
MM1 pKa = 7.0GQYY4 pKa = 9.82HH5 pKa = 5.94RR6 pKa = 11.84QGEE9 pKa = 4.17QGHH12 pKa = 5.75AKK14 pKa = 10.13GRR16 pKa = 11.84IRR18 pKa = 11.84RR19 pKa = 11.84TGLVCRR25 pKa = 11.84LCIAGRR31 pKa = 11.84SRR33 pKa = 11.84GVRR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.71EE39 pKa = 3.49CHH41 pKa = 6.16FRR43 pKa = 11.84YY44 pKa = 9.89QPVDD48 pKa = 3.0MRR50 pKa = 11.84YY51 pKa = 9.97RR52 pKa = 11.84IRR54 pKa = 11.84KK55 pKa = 8.67GLEE58 pKa = 3.9SPCMIRR64 pKa = 11.84GLLSGDD70 pKa = 2.97YY71 pKa = 9.65WIFVGCCSAAFVLFFLGIRR90 pKa = 11.84AGISAGNWNLPVLVLVISLPTLPLLLYY117 pKa = 9.93KK118 pKa = 10.47LKK120 pKa = 10.79RR121 pKa = 11.84KK122 pKa = 9.24ARR124 pKa = 11.84PQKK127 pKa = 10.32FKK129 pKa = 10.52EE130 pKa = 4.06TGKK133 pKa = 10.56EE134 pKa = 3.79INISNLDD141 pKa = 3.4INRR144 pKa = 11.84VLTKK148 pKa = 10.21KK149 pKa = 9.29EE150 pKa = 3.75HH151 pKa = 5.52NEE153 pKa = 3.12IRR155 pKa = 11.84RR156 pKa = 11.84GIQHH160 pKa = 6.08TT161 pKa = 3.73

Molecular weight: 18.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3982

0

3982

1490209

31

1892

374.2

42.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.864 ± 0.037

1.288 ± 0.015

5.472 ± 0.026

6.618 ± 0.035

4.568 ± 0.024

6.865 ± 0.036

1.971 ± 0.017

6.878 ± 0.033

6.789 ± 0.03

9.017 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.828 ± 0.018

5.232 ± 0.03

3.729 ± 0.018

3.422 ± 0.019

4.653 ± 0.027

5.995 ± 0.029

5.586 ± 0.028

6.328 ± 0.029

1.344 ± 0.015

4.554 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski