Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_64

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.217AlaAla: 1.217 ± 0.569
0.0AlaCys: 0.0 ± 0.0
1.217AlaAsp: 1.217 ± 1.306
3.041AlaGlu: 3.041 ± 1.245
1.825AlaPhe: 1.825 ± 0.5
1.217AlaGly: 1.217 ± 0.569
2.433AlaHis: 2.433 ± 1.201
2.433AlaIle: 2.433 ± 1.727
1.825AlaLys: 1.825 ± 0.725
6.691AlaLeu: 6.691 ± 2.501
0.0AlaMet: 0.0 ± 0.0
3.65AlaAsn: 3.65 ± 1.503
1.825AlaPro: 1.825 ± 0.748
3.041AlaGln: 3.041 ± 1.57
1.217AlaArg: 1.217 ± 0.545
3.65AlaSer: 3.65 ± 0.861
1.217AlaThr: 1.217 ± 0.771
1.217AlaVal: 1.217 ± 0.771
0.0AlaTrp: 0.0 ± 0.0
0.608AlaTyr: 0.608 ± 0.385
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.608CysCys: 0.608 ± 0.385
0.0CysAsp: 0.0 ± 0.0
1.825CysGlu: 1.825 ± 0.725
0.0CysPhe: 0.0 ± 0.0
1.217CysGly: 1.217 ± 0.545
0.0CysHis: 0.0 ± 0.0
1.825CysIle: 1.825 ± 1.056
0.608CysLys: 0.608 ± 0.605
0.608CysLeu: 0.608 ± 0.605
0.0CysMet: 0.0 ± 0.0
1.825CysAsn: 1.825 ± 1.085
1.217CysPro: 1.217 ± 0.545
0.0CysGln: 0.0 ± 0.0
0.608CysArg: 0.608 ± 0.605
0.608CysSer: 0.608 ± 0.605
0.0CysThr: 0.0 ± 0.0
0.608CysVal: 0.608 ± 0.605
0.0CysTrp: 0.0 ± 0.0
0.608CysTyr: 0.608 ± 0.605
0.0CysXaa: 0.0 ± 0.0
Asp
1.217AspAla: 1.217 ± 0.545
0.608AspCys: 0.608 ± 0.605
2.433AspAsp: 2.433 ± 1.146
1.217AspGlu: 1.217 ± 0.569
2.433AspPhe: 2.433 ± 1.461
1.825AspGly: 1.825 ± 0.725
2.433AspHis: 2.433 ± 1.381
4.866AspIle: 4.866 ± 2.26
4.258AspLys: 4.258 ± 1.611
6.083AspLeu: 6.083 ± 1.362
1.825AspMet: 1.825 ± 0.879
6.083AspAsn: 6.083 ± 1.35
2.433AspPro: 2.433 ± 1.017
3.65AspGln: 3.65 ± 0.713
0.0AspArg: 0.0 ± 0.0
4.258AspSer: 4.258 ± 0.827
6.083AspThr: 6.083 ± 1.654
3.041AspVal: 3.041 ± 2.627
0.608AspTrp: 0.608 ± 0.385
2.433AspTyr: 2.433 ± 1.172
0.0AspXaa: 0.0 ± 0.0
Glu
0.608GluAla: 0.608 ± 0.62
0.0GluCys: 0.0 ± 0.0
1.217GluAsp: 1.217 ± 0.569
1.217GluGlu: 1.217 ± 0.569
5.474GluPhe: 5.474 ± 2.187
0.608GluGly: 0.608 ± 0.385
0.0GluHis: 0.0 ± 0.0
3.041GluIle: 3.041 ± 1.224
3.041GluLys: 3.041 ± 1.74
4.866GluLeu: 4.866 ± 0.953
0.608GluMet: 0.608 ± 0.385
4.866GluAsn: 4.866 ± 1.972
2.433GluPro: 2.433 ± 0.518
1.217GluGln: 1.217 ± 0.726
0.608GluArg: 0.608 ± 0.385
4.866GluSer: 4.866 ± 0.89
5.474GluThr: 5.474 ± 1.728
1.825GluVal: 1.825 ± 1.163
0.0GluTrp: 0.0 ± 0.0
3.65GluTyr: 3.65 ± 1.73
0.0GluXaa: 0.0 ± 0.0
Phe
6.083PheAla: 6.083 ± 3.245
0.608PheCys: 0.608 ± 0.385
6.083PheAsp: 6.083 ± 2.898
2.433PheGlu: 2.433 ± 2.059
4.258PhePhe: 4.258 ± 2.325
3.041PheGly: 3.041 ± 0.967
0.0PheHis: 0.0 ± 0.0
3.65PheIle: 3.65 ± 1.389
3.65PheLys: 3.65 ± 1.974
3.041PheLeu: 3.041 ± 1.338
1.217PheMet: 1.217 ± 0.771
6.083PheAsn: 6.083 ± 5.264
1.217PhePro: 1.217 ± 0.771
3.65PheGln: 3.65 ± 1.73
1.825PheArg: 1.825 ± 0.725
6.691PheSer: 6.691 ± 2.337
4.866PheThr: 4.866 ± 2.09
3.041PheVal: 3.041 ± 0.764
0.0PheTrp: 0.0 ± 0.0
3.041PheTyr: 3.041 ± 0.864
0.0PheXaa: 0.0 ± 0.0
Gly
1.825GlyAla: 1.825 ± 0.725
0.0GlyCys: 0.0 ± 0.0
2.433GlyAsp: 2.433 ± 1.146
1.825GlyGlu: 1.825 ± 1.156
2.433GlyPhe: 2.433 ± 0.759
0.0GlyGly: 0.0 ± 0.0
0.0GlyHis: 0.0 ± 0.0
2.433GlyIle: 2.433 ± 1.025
4.866GlyLys: 4.866 ± 2.051
0.608GlyLeu: 0.608 ± 0.385
0.0GlyMet: 0.0 ± 0.0
0.608GlyAsn: 0.608 ± 0.385
0.608GlyPro: 0.608 ± 0.605
3.65GlyGln: 3.65 ± 0.972
0.0GlyArg: 0.0 ± 0.0
3.65GlySer: 3.65 ± 1.436
1.217GlyThr: 1.217 ± 0.569
2.433GlyVal: 2.433 ± 0.953
0.608GlyTrp: 0.608 ± 0.385
1.825GlyTyr: 1.825 ± 1.156
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
2.433HisAsp: 2.433 ± 1.542
1.217HisGlu: 1.217 ± 0.924
3.041HisPhe: 3.041 ± 0.967
0.608HisGly: 0.608 ± 0.605
0.0HisHis: 0.0 ± 0.0
0.608HisIle: 0.608 ± 0.385
3.041HisLys: 3.041 ± 1.921
3.65HisLeu: 3.65 ± 1.321
1.217HisMet: 1.217 ± 0.515
0.608HisAsn: 0.608 ± 0.62
1.217HisPro: 1.217 ± 0.545
1.825HisGln: 1.825 ± 1.126
1.217HisArg: 1.217 ± 1.306
1.825HisSer: 1.825 ± 0.987
0.608HisThr: 0.608 ± 0.385
0.0HisVal: 0.0 ± 0.0
0.608HisTrp: 0.608 ± 0.385
1.825HisTyr: 1.825 ± 0.725
0.0HisXaa: 0.0 ± 0.0
Ile
1.825IleAla: 1.825 ± 1.056
0.0IleCys: 0.0 ± 0.0
7.299IleAsp: 7.299 ± 1.541
3.65IleGlu: 3.65 ± 1.321
3.65IlePhe: 3.65 ± 1.73
1.825IleGly: 1.825 ± 1.208
1.217IleHis: 1.217 ± 0.771
3.65IleIle: 3.65 ± 1.612
5.474IleLys: 5.474 ± 1.885
7.908IleLeu: 7.908 ± 1.915
0.608IleMet: 0.608 ± 0.542
9.124IleAsn: 9.124 ± 2.692
2.433IlePro: 2.433 ± 1.542
3.65IleGln: 3.65 ± 2.166
3.65IleArg: 3.65 ± 1.436
8.516IleSer: 8.516 ± 1.314
4.258IleThr: 4.258 ± 1.397
1.825IleVal: 1.825 ± 1.208
1.217IleTrp: 1.217 ± 0.545
2.433IleTyr: 2.433 ± 1.025
0.0IleXaa: 0.0 ± 0.0
Lys
2.433LysAla: 2.433 ± 1.454
1.217LysCys: 1.217 ± 1.21
4.258LysAsp: 4.258 ± 1.66
2.433LysGlu: 2.433 ± 1.045
7.299LysPhe: 7.299 ± 1.989
1.825LysGly: 1.825 ± 0.5
1.825LysHis: 1.825 ± 1.185
7.299LysIle: 7.299 ± 1.818
3.65LysLys: 3.65 ± 1.561
7.908LysLeu: 7.908 ± 2.702
1.825LysMet: 1.825 ± 1.786
5.474LysAsn: 5.474 ± 2.818
2.433LysPro: 2.433 ± 1.542
5.474LysGln: 5.474 ± 1.684
4.258LysArg: 4.258 ± 1.328
3.65LysSer: 3.65 ± 0.999
3.65LysThr: 3.65 ± 1.581
3.041LysVal: 3.041 ± 1.467
0.0LysTrp: 0.0 ± 0.0
5.474LysTyr: 5.474 ± 1.561
0.0LysXaa: 0.0 ± 0.0
Leu
3.65LeuAla: 3.65 ± 1.796
0.608LeuCys: 0.608 ± 0.385
4.258LeuAsp: 4.258 ± 1.15
4.258LeuGlu: 4.258 ± 1.397
4.258LeuPhe: 4.258 ± 1.673
5.474LeuGly: 5.474 ± 1.728
4.866LeuHis: 4.866 ± 0.916
4.866LeuIle: 4.866 ± 2.121
6.691LeuLys: 6.691 ± 3.359
6.083LeuLeu: 6.083 ± 1.036
0.0LeuMet: 0.0 ± 0.0
8.516LeuAsn: 8.516 ± 2.872
4.866LeuPro: 4.866 ± 2.051
6.083LeuGln: 6.083 ± 1.346
2.433LeuArg: 2.433 ± 1.847
7.299LeuSer: 7.299 ± 3.23
5.474LeuThr: 5.474 ± 1.563
3.65LeuVal: 3.65 ± 2.137
1.825LeuTrp: 1.825 ± 0.725
4.866LeuTyr: 4.866 ± 2.055
0.0LeuXaa: 0.0 ± 0.0
Met
0.608MetAla: 0.608 ± 0.385
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.217MetGlu: 1.217 ± 0.727
0.608MetPhe: 0.608 ± 0.385
0.0MetGly: 0.0 ± 0.0
0.608MetHis: 0.608 ± 0.385
1.217MetIle: 1.217 ± 0.726
1.825MetLys: 1.825 ± 1.52
0.0MetLeu: 0.0 ± 0.0
0.608MetMet: 0.608 ± 0.385
1.217MetAsn: 1.217 ± 0.771
0.608MetPro: 0.608 ± 0.385
0.608MetGln: 0.608 ± 0.385
1.217MetArg: 1.217 ± 0.726
0.608MetSer: 0.608 ± 0.385
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
2.433MetTyr: 2.433 ± 0.954
0.0MetXaa: 0.0 ± 0.0
Asn
3.041AsnAla: 3.041 ± 1.673
1.217AsnCys: 1.217 ± 0.545
3.65AsnAsp: 3.65 ± 0.933
3.041AsnGlu: 3.041 ± 1.298
3.65AsnPhe: 3.65 ± 0.994
1.825AsnGly: 1.825 ± 0.764
3.041AsnHis: 3.041 ± 1.08
6.691AsnIle: 6.691 ± 1.437
11.557AsnLys: 11.557 ± 3.934
7.299AsnLeu: 7.299 ± 2.199
0.0AsnMet: 0.0 ± 0.0
6.083AsnAsn: 6.083 ± 1.798
3.041AsnPro: 3.041 ± 1.272
3.041AsnGln: 3.041 ± 2.625
4.866AsnArg: 4.866 ± 1.54
9.732AsnSer: 9.732 ± 1.808
2.433AsnThr: 2.433 ± 0.881
3.041AsnVal: 3.041 ± 2.225
0.608AsnTrp: 0.608 ± 0.385
3.041AsnTyr: 3.041 ± 1.608
0.0AsnXaa: 0.0 ± 0.0
Pro
0.608ProAla: 0.608 ± 0.385
1.217ProCys: 1.217 ± 1.21
3.65ProAsp: 3.65 ± 1.071
0.608ProGlu: 0.608 ± 0.958
3.041ProPhe: 3.041 ± 1.927
1.825ProGly: 1.825 ± 1.156
0.608ProHis: 0.608 ± 0.605
2.433ProIle: 2.433 ± 0.518
1.825ProLys: 1.825 ± 1.156
4.258ProLeu: 4.258 ± 1.452
0.608ProMet: 0.608 ± 0.385
1.217ProAsn: 1.217 ± 0.569
1.825ProPro: 1.825 ± 1.105
4.258ProGln: 4.258 ± 0.829
1.825ProArg: 1.825 ± 0.725
4.866ProSer: 4.866 ± 1.502
3.65ProThr: 3.65 ± 1.167
3.041ProVal: 3.041 ± 1.369
0.608ProTrp: 0.608 ± 0.385
1.217ProTyr: 1.217 ± 0.726
0.0ProXaa: 0.0 ± 0.0
Gln
2.433GlnAla: 2.433 ± 1.138
1.217GlnCys: 1.217 ± 0.545
1.825GlnAsp: 1.825 ± 0.748
1.825GlnGlu: 1.825 ± 0.725
1.825GlnPhe: 1.825 ± 1.471
1.825GlnGly: 1.825 ± 0.748
1.825GlnHis: 1.825 ± 0.748
6.083GlnIle: 6.083 ± 1.193
6.083GlnLys: 6.083 ± 2.584
4.258GlnLeu: 4.258 ± 0.958
1.217GlnMet: 1.217 ± 0.726
4.866GlnAsn: 4.866 ± 1.905
1.217GlnPro: 1.217 ± 0.771
6.083GlnGln: 6.083 ± 2.11
1.825GlnArg: 1.825 ± 1.581
6.691GlnSer: 6.691 ± 2.721
4.866GlnThr: 4.866 ± 1.779
3.65GlnVal: 3.65 ± 1.636
0.0GlnTrp: 0.0 ± 0.0
1.825GlnTyr: 1.825 ± 0.725
0.0GlnXaa: 0.0 ± 0.0
Arg
2.433ArgAla: 2.433 ± 1.356
1.217ArgCys: 1.217 ± 0.545
1.217ArgAsp: 1.217 ± 1.042
0.608ArgGlu: 0.608 ± 0.385
1.217ArgPhe: 1.217 ± 0.545
1.217ArgGly: 1.217 ± 0.726
0.608ArgHis: 0.608 ± 0.605
6.083ArgIle: 6.083 ± 1.08
2.433ArgLys: 2.433 ± 1.446
3.041ArgLeu: 3.041 ± 1.068
0.0ArgMet: 0.0 ± 0.0
1.825ArgAsn: 1.825 ± 1.185
2.433ArgPro: 2.433 ± 0.954
1.217ArgGln: 1.217 ± 0.727
1.217ArgArg: 1.217 ± 1.21
3.041ArgSer: 3.041 ± 1.224
1.825ArgThr: 1.825 ± 0.879
2.433ArgVal: 2.433 ± 2.202
0.0ArgTrp: 0.0 ± 0.0
1.825ArgTyr: 1.825 ± 1.257
0.0ArgXaa: 0.0 ± 0.0
Ser
4.258SerAla: 4.258 ± 1.505
2.433SerCys: 2.433 ± 1.017
4.866SerAsp: 4.866 ± 1.714
5.474SerGlu: 5.474 ± 1.309
6.083SerPhe: 6.083 ± 1.894
1.217SerGly: 1.217 ± 0.771
1.825SerHis: 1.825 ± 0.879
7.299SerIle: 7.299 ± 1.686
6.083SerLys: 6.083 ± 1.08
10.341SerLeu: 10.341 ± 4.593
1.825SerMet: 1.825 ± 1.156
4.866SerAsn: 4.866 ± 1.276
6.083SerPro: 6.083 ± 2.412
6.691SerGln: 6.691 ± 1.871
3.041SerArg: 3.041 ± 1.451
6.691SerSer: 6.691 ± 2.141
3.041SerThr: 3.041 ± 1.272
2.433SerVal: 2.433 ± 1.643
0.608SerTrp: 0.608 ± 0.605
6.083SerTyr: 6.083 ± 1.813
0.0SerXaa: 0.0 ± 0.0
Thr
2.433ThrAla: 2.433 ± 1.025
0.0ThrCys: 0.0 ± 0.0
1.825ThrAsp: 1.825 ± 0.748
3.65ThrGlu: 3.65 ± 1.436
4.866ThrPhe: 4.866 ± 2.186
1.825ThrGly: 1.825 ± 1.156
1.825ThrHis: 1.825 ± 0.764
5.474ThrIle: 5.474 ± 1.463
1.217ThrLys: 1.217 ± 0.569
7.908ThrLeu: 7.908 ± 2.019
0.0ThrMet: 0.0 ± 0.0
3.65ThrAsn: 3.65 ± 1.779
2.433ThrPro: 2.433 ± 1.045
3.65ThrGln: 3.65 ± 0.713
2.433ThrArg: 2.433 ± 1.017
4.866ThrSer: 4.866 ± 0.979
3.65ThrThr: 3.65 ± 2.252
3.041ThrVal: 3.041 ± 1.774
0.0ThrTrp: 0.0 ± 0.0
3.041ThrTyr: 3.041 ± 0.764
0.0ThrXaa: 0.0 ± 0.0
Val
2.433ValAla: 2.433 ± 0.986
0.0ValCys: 0.0 ± 0.0
3.65ValAsp: 3.65 ± 1.78
3.041ValGlu: 3.041 ± 0.764
2.433ValPhe: 2.433 ± 2.084
1.825ValGly: 1.825 ± 0.5
1.217ValHis: 1.217 ± 1.075
0.0ValIle: 0.0 ± 0.0
3.65ValLys: 3.65 ± 2.239
1.217ValLeu: 1.217 ± 0.726
0.608ValMet: 0.608 ± 0.605
3.041ValAsn: 3.041 ± 0.884
3.041ValPro: 3.041 ± 1.07
1.825ValGln: 1.825 ± 0.879
0.608ValArg: 0.608 ± 0.605
5.474ValSer: 5.474 ± 2.28
3.041ValThr: 3.041 ± 1.07
0.608ValVal: 0.608 ± 0.385
0.608ValTrp: 0.608 ± 0.605
3.041ValTyr: 3.041 ± 1.068
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.217TrpAsp: 1.217 ± 0.545
0.608TrpGlu: 0.608 ± 0.385
1.825TrpPhe: 1.825 ± 0.725
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.217TrpLeu: 1.217 ± 0.771
0.0TrpMet: 0.0 ± 0.0
1.217TrpAsn: 1.217 ± 0.545
0.0TrpPro: 0.0 ± 0.0
0.608TrpGln: 0.608 ± 0.385
1.217TrpArg: 1.217 ± 0.545
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.608TrpTyr: 0.608 ± 0.385
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.217TyrAla: 1.217 ± 0.727
1.217TyrCys: 1.217 ± 1.21
4.258TyrAsp: 4.258 ± 1.452
2.433TyrGlu: 2.433 ± 0.954
4.258TyrPhe: 4.258 ± 1.58
1.825TyrGly: 1.825 ± 0.725
1.217TyrHis: 1.217 ± 0.545
4.258TyrIle: 4.258 ± 2.323
4.258TyrLys: 4.258 ± 1.301
3.041TyrLeu: 3.041 ± 2.063
0.608TyrMet: 0.608 ± 0.385
6.083TyrAsn: 6.083 ± 0.905
1.825TyrPro: 1.825 ± 0.725
1.217TyrGln: 1.217 ± 0.726
1.825TyrArg: 1.825 ± 1.257
4.258TyrSer: 4.258 ± 1.452
2.433TyrThr: 2.433 ± 1.608
2.433TyrVal: 2.433 ± 1.025
1.217TyrTrp: 1.217 ± 0.771
1.825TyrTyr: 1.825 ± 0.725
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1645 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski