Rhodoplanes elegans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Hyphomicrobiaceae; Rhodoplanes

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5973 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A327KY74|A0A327KY74_9RHIZ Xanthine dehydrogenase OS=Rhodoplanes elegans OX=29408 GN=CH338_00985 PE=4 SV=1
MM1 pKa = 7.29SLSGALNSAVSALNSQSQAISMVSDD26 pKa = 4.35NIANASTTGYY36 pKa = 8.56KK37 pKa = 9.3TVTASFEE44 pKa = 4.45SLLSSSSSSAGYY56 pKa = 10.54ASGGVAVSARR66 pKa = 11.84YY67 pKa = 9.43NISEE71 pKa = 4.1QGLLTSSTSDD81 pKa = 2.54TAMAIDD87 pKa = 3.91GNGFFVVRR95 pKa = 11.84DD96 pKa = 3.84ASGSTYY102 pKa = 7.56YY103 pKa = 9.98TRR105 pKa = 11.84NGDD108 pKa = 4.53AVIDD112 pKa = 4.13DD113 pKa = 4.18ANGYY117 pKa = 7.89LTIGGNYY124 pKa = 9.49LMGWPTDD131 pKa = 3.16QDD133 pKa = 3.91GNVTGGEE140 pKa = 4.04TAATLTRR147 pKa = 11.84IDD149 pKa = 3.5TSALQSVASATTTEE163 pKa = 4.33IIEE166 pKa = 4.47ANLPADD172 pKa = 3.8AATNATFTTTMDD184 pKa = 3.44VYY186 pKa = 11.34DD187 pKa = 4.05SLGTASSVTITWEE200 pKa = 3.87KK201 pKa = 9.35TGEE204 pKa = 4.19NNWTASFSNATLSSDD219 pKa = 3.43SSVTSGTVTGSIDD232 pKa = 3.26IVFNEE237 pKa = 4.69DD238 pKa = 2.58GTLASTSPSPATISITGWTTGAANQTITLDD268 pKa = 3.41LGTVGGADD276 pKa = 3.69GLTQYY281 pKa = 11.18SSDD284 pKa = 3.7SQTPSIDD291 pKa = 3.86LKK293 pKa = 11.44SIDD296 pKa = 4.24QDD298 pKa = 3.43GLAYY302 pKa = 10.42GSLTGISVEE311 pKa = 4.4DD312 pKa = 4.01GGNVTATYY320 pKa = 10.97SNGEE324 pKa = 4.0TYY326 pKa = 10.54VIYY329 pKa = 10.36KK330 pKa = 9.75VAVATFANADD340 pKa = 3.58GLTTVSGGMYY350 pKa = 9.92QEE352 pKa = 4.37STKK355 pKa = 10.88SGSATLHH362 pKa = 5.42EE363 pKa = 5.5AGLGGAGSIKK373 pKa = 10.25GSKK376 pKa = 10.09LEE378 pKa = 4.21SSTADD383 pKa = 3.19TTAEE387 pKa = 4.03FSTMITAQQAYY398 pKa = 9.09SAAAQVVSTVSEE410 pKa = 4.31MYY412 pKa = 8.28DD413 pKa = 3.0TLMSSVRR420 pKa = 3.49

Molecular weight: 42.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A327KJX9|A0A327KJX9_9RHIZ Uncharacterized protein OS=Rhodoplanes elegans OX=29408 GN=CH338_14630 PE=4 SV=1
MM1 pKa = 7.63ARR3 pKa = 11.84PIGAVAVRR11 pKa = 11.84AAALTPARR19 pKa = 11.84LPVALATVAPPIVALLATLRR39 pKa = 11.84TVAPIAAMVATAAAIGPIAARR60 pKa = 11.84FGALRR65 pKa = 11.84RR66 pKa = 11.84RR67 pKa = 11.84HH68 pKa = 5.08GLAVRR73 pKa = 4.34

Molecular weight: 7.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5973

0

5973

1759521

19

2359

294.6

31.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.919 ± 0.053

0.83 ± 0.011

5.678 ± 0.025

5.253 ± 0.024

3.444 ± 0.02

8.744 ± 0.034

1.953 ± 0.017

4.673 ± 0.023

2.978 ± 0.027

9.963 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.222 ± 0.016

2.076 ± 0.017

5.745 ± 0.027

2.701 ± 0.018

7.793 ± 0.034

4.789 ± 0.025

5.657 ± 0.027

8.303 ± 0.03

1.308 ± 0.013

1.971 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski