Synechococcus phage S-CAM7

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Mazuvirus; Synechococcus virus SCAM7

Average proteome isoelectric point is 5.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 266 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D8KTR1|A0A1D8KTR1_9CAUD Uncharacterized protein OS=Synechococcus phage S-CAM7 OX=1883368 GN=C490910_085 PE=4 SV=1
MM1 pKa = 7.1NTLKK5 pKa = 10.79DD6 pKa = 3.5LQARR10 pKa = 11.84VAALIEE16 pKa = 4.12QQGEE20 pKa = 4.26DD21 pKa = 4.11SVCAAWIYY29 pKa = 10.02TGEE32 pKa = 3.99DD33 pKa = 3.34VIRR36 pKa = 11.84YY37 pKa = 9.27DD38 pKa = 4.2EE39 pKa = 4.42NCDD42 pKa = 4.26AIRR45 pKa = 11.84QPKK48 pKa = 8.75EE49 pKa = 3.71LSDD52 pKa = 3.7KK53 pKa = 10.82VINGLDD59 pKa = 3.74DD60 pKa = 3.53YY61 pKa = 11.65DD62 pKa = 4.69YY63 pKa = 10.34IYY65 pKa = 10.94QVIDD69 pKa = 3.37EE70 pKa = 5.88AITQEE75 pKa = 4.71LDD77 pKa = 3.13EE78 pKa = 4.8CVV80 pKa = 3.07

Molecular weight: 9.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D8KUU4|A0A1D8KUU4_9CAUD Uncharacterized protein OS=Synechococcus phage S-CAM7 OX=1883368 GN=C490910_231 PE=4 SV=1
MM1 pKa = 7.45IGYY4 pKa = 9.91INMLAIRR11 pKa = 11.84SLNGIAKK18 pKa = 9.3PCDD21 pKa = 3.31EE22 pKa = 5.63IIRR25 pKa = 11.84TTHH28 pKa = 6.01SLRR31 pKa = 11.84KK32 pKa = 9.35SEE34 pKa = 4.17KK35 pKa = 8.32PLLRR39 pKa = 11.84RR40 pKa = 11.84ASRR43 pKa = 11.84HH44 pKa = 4.27LL45 pKa = 3.63

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

266

0

266

66165

38

4314

248.7

27.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.809 ± 0.273

0.886 ± 0.086

6.6 ± 0.124

6.144 ± 0.246

4.3 ± 0.139

8.464 ± 0.431

1.381 ± 0.117

6.788 ± 0.2

4.968 ± 0.372

7.401 ± 0.152

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.874 ± 0.175

5.754 ± 0.191

4.047 ± 0.151

3.434 ± 0.08

4.047 ± 0.152

7.548 ± 0.214

7.726 ± 0.335

7.022 ± 0.286

0.892 ± 0.085

3.916 ± 0.155
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski