Rhizophagus irregularis (strain DAOM 197198w) (Glomus intraradices)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus; Rhizophagus irregularis

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28669 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A015KZ70|A0A015KZ70_RHIIW Uncharacterized protein OS=Rhizophagus irregularis (strain DAOM 197198w) OX=1432141 GN=RirG_065160 PE=4 SV=1
MM1 pKa = 7.55EE2 pKa = 6.14FIKK5 pKa = 10.7VDD7 pKa = 3.58PRR9 pKa = 11.84KK10 pKa = 10.08VLYY13 pKa = 9.42SQYY16 pKa = 10.6SIRR19 pKa = 11.84PRR21 pKa = 11.84FRR23 pKa = 11.84DD24 pKa = 3.45DD25 pKa = 3.91EE26 pKa = 4.98LIEE29 pKa = 4.1DD30 pKa = 4.78TIDD33 pKa = 3.35QLVSGEE39 pKa = 4.13ISPKK43 pKa = 9.65NIEE46 pKa = 4.54HH47 pKa = 6.85IRR49 pKa = 11.84VCTFKK54 pKa = 11.33GKK56 pKa = 7.98MHH58 pKa = 6.55SLDD61 pKa = 3.23NRR63 pKa = 11.84RR64 pKa = 11.84LYY66 pKa = 11.08AFRR69 pKa = 11.84EE70 pKa = 4.52AIKK73 pKa = 10.15RR74 pKa = 11.84GCSFRR79 pKa = 11.84TVPAIRR85 pKa = 11.84SYY87 pKa = 11.42EE88 pKa = 3.85FDD90 pKa = 3.17EE91 pKa = 5.32LKK93 pKa = 10.78RR94 pKa = 11.84KK95 pKa = 6.99MTSPPSPDD103 pKa = 3.02YY104 pKa = 11.3SVIKK108 pKa = 10.11VRR110 pKa = 11.84RR111 pKa = 11.84DD112 pKa = 2.84IYY114 pKa = 10.74IPEE117 pKa = 4.67DD118 pKa = 4.26LYY120 pKa = 11.62DD121 pKa = 6.09DD122 pKa = 6.17DD123 pKa = 7.62DD124 pKa = 7.22DD125 pKa = 7.42DD126 pKa = 6.53DD127 pKa = 6.57DD128 pKa = 5.33EE129 pKa = 5.33YY130 pKa = 11.63EE131 pKa = 4.36EE132 pKa = 5.05YY133 pKa = 10.81DD134 pKa = 5.04DD135 pKa = 6.24EE136 pKa = 6.17EE137 pKa = 6.95DD138 pKa = 3.79DD139 pKa = 5.8DD140 pKa = 6.08EE141 pKa = 6.04YY142 pKa = 11.76DD143 pKa = 3.69EE144 pKa = 4.54YY145 pKa = 11.67DD146 pKa = 3.36EE147 pKa = 5.51YY148 pKa = 11.51EE149 pKa = 4.7EE150 pKa = 5.12EE151 pKa = 6.17DD152 pKa = 3.84EE153 pKa = 6.24DD154 pKa = 6.69DD155 pKa = 4.39DD156 pKa = 6.47DD157 pKa = 5.92EE158 pKa = 6.75YY159 pKa = 11.75DD160 pKa = 4.41DD161 pKa = 6.03EE162 pKa = 6.17SDD164 pKa = 3.78EE165 pKa = 6.34DD166 pKa = 3.7EE167 pKa = 5.21DD168 pKa = 5.28EE169 pKa = 4.44YY170 pKa = 11.81DD171 pKa = 3.51EE172 pKa = 5.31EE173 pKa = 5.42YY174 pKa = 11.1YY175 pKa = 10.95GYY177 pKa = 10.73DD178 pKa = 4.15YY179 pKa = 11.52DD180 pKa = 6.45DD181 pKa = 5.21EE182 pKa = 7.57DD183 pKa = 6.09DD184 pKa = 5.89DD185 pKa = 6.09EE186 pKa = 6.77YY187 pKa = 11.77DD188 pKa = 3.56DD189 pKa = 6.13DD190 pKa = 6.17EE191 pKa = 6.07YY192 pKa = 11.78DD193 pKa = 3.02EE194 pKa = 5.48YY195 pKa = 11.92YY196 pKa = 10.73DD197 pKa = 4.2YY198 pKa = 11.71DD199 pKa = 3.73VLNSFGRR206 pKa = 11.84LYY208 pKa = 10.53II209 pKa = 4.05

Molecular weight: 25.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A015IVX4|A0A015IVX4_RHIIW Gag-pol fusion protein OS=Rhizophagus irregularis (strain DAOM 197198w) OX=1432141 GN=RirG_197930 PE=4 SV=1
MM1 pKa = 7.83RR2 pKa = 11.84NHH4 pKa = 5.99NVINVKK10 pKa = 10.05RR11 pKa = 11.84MRR13 pKa = 11.84NHH15 pKa = 5.69NVINVKK21 pKa = 10.05RR22 pKa = 11.84MRR24 pKa = 11.84NHH26 pKa = 5.69NVINVKK32 pKa = 10.08RR33 pKa = 11.84MRR35 pKa = 11.84NHH37 pKa = 6.59NIINVKK43 pKa = 9.76RR44 pKa = 11.84LRR46 pKa = 11.84NHH48 pKa = 6.62NIINVKK54 pKa = 9.76RR55 pKa = 11.84LRR57 pKa = 11.84NHH59 pKa = 6.62NIINVKK65 pKa = 9.76RR66 pKa = 11.84LRR68 pKa = 11.84NHH70 pKa = 6.62NIINVKK76 pKa = 9.76RR77 pKa = 11.84LRR79 pKa = 11.84NHH81 pKa = 6.62NIINVKK87 pKa = 9.76RR88 pKa = 11.84LRR90 pKa = 11.84NHH92 pKa = 6.62NIINVKK98 pKa = 9.76RR99 pKa = 11.84LRR101 pKa = 11.84NHH103 pKa = 6.62NIINVKK109 pKa = 9.76RR110 pKa = 11.84LRR112 pKa = 11.84NHH114 pKa = 6.59NIINEE119 pKa = 4.19RR120 pKa = 11.84PP121 pKa = 3.26

Molecular weight: 14.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26712

1957

28669

10097224

49

5493

352.2

40.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.494 ± 0.016

1.585 ± 0.007

5.837 ± 0.012

6.997 ± 0.017

4.602 ± 0.01

4.486 ± 0.013

2.172 ± 0.007

8.169 ± 0.018

8.031 ± 0.019

9.01 ± 0.017

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.957 ± 0.006

7.378 ± 0.018

3.979 ± 0.016

3.832 ± 0.009

4.262 ± 0.013

7.783 ± 0.017

5.191 ± 0.012

4.779 ± 0.011

1.234 ± 0.005

4.217 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski