Tamaricihabitans halophyticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Tamaricihabitans

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5978 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R2RAZ5|A0A4R2RAZ5_9PSEU Uncharacterized protein DUF4177 OS=Tamaricihabitans halophyticus OX=1262583 GN=EV191_101829 PE=4 SV=1
MM1 pKa = 7.95RR2 pKa = 11.84ARR4 pKa = 11.84SLVVGLLAGAGLVLASVMGPAAAAAPAAEE33 pKa = 4.27NPNDD37 pKa = 3.63GVTPYY42 pKa = 10.48IIGGEE47 pKa = 4.25DD48 pKa = 3.47ADD50 pKa = 3.76QEE52 pKa = 4.86YY53 pKa = 9.57PFMTSLQDD61 pKa = 3.72SQGHH65 pKa = 5.14FCGGSLISSEE75 pKa = 4.18WVLTAAHH82 pKa = 6.75CVQGSAPGDD91 pKa = 3.35FTARR95 pKa = 11.84IGSNDD100 pKa = 3.08NSQGGEE106 pKa = 3.84EE107 pKa = 4.17AGVTEE112 pKa = 4.78VVPHH116 pKa = 7.09PDD118 pKa = 3.04YY119 pKa = 11.61DD120 pKa = 4.06GASPGADD127 pKa = 2.57IALVKK132 pKa = 10.24LDD134 pKa = 4.43KK135 pKa = 10.77AVQAAPIKK143 pKa = 9.48VTGSTEE149 pKa = 3.63AGTASRR155 pKa = 11.84LLGWGQTCPEE165 pKa = 4.29QGCGDD170 pKa = 4.38VPTMLQQLDD179 pKa = 3.97TSVVAAEE186 pKa = 4.24EE187 pKa = 4.4CTGGIDD193 pKa = 5.33GSTEE197 pKa = 3.97LCTDD201 pKa = 3.64NPNGDD206 pKa = 3.37SGACYY211 pKa = 10.05GDD213 pKa = 3.2SGGPQIVQSGDD224 pKa = 2.26GWTQIGVTSRR234 pKa = 11.84TGNNDD239 pKa = 3.03PTCATGPSIYY249 pKa = 9.69TNAVAYY255 pKa = 8.63TDD257 pKa = 4.6WINEE261 pKa = 4.21TTGGALAAA269 pKa = 4.86

Molecular weight: 26.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R2QZ34|A0A4R2QZ34_9PSEU Sugar/nucleoside kinase (Ribokinase family) OS=Tamaricihabitans halophyticus OX=1262583 GN=EV191_102157 PE=4 SV=1
MM1 pKa = 7.66KK2 pKa = 10.1VRR4 pKa = 11.84KK5 pKa = 9.11SLRR8 pKa = 11.84SLKK11 pKa = 9.97NRR13 pKa = 11.84PGSQVVRR20 pKa = 11.84RR21 pKa = 11.84HH22 pKa = 5.11GKK24 pKa = 9.21VLVINKK30 pKa = 9.15RR31 pKa = 11.84NPRR34 pKa = 11.84FKK36 pKa = 10.78ARR38 pKa = 11.84QGG40 pKa = 3.28

Molecular weight: 4.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5978

0

5978

1946036

26

23820

325.5

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.272 ± 0.044

0.797 ± 0.013

5.832 ± 0.029

6.039 ± 0.031

2.851 ± 0.021

9.09 ± 0.031

2.131 ± 0.015

3.812 ± 0.026

1.889 ± 0.019

10.629 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.828 ± 0.016

2.034 ± 0.014

5.623 ± 0.028

3.16 ± 0.02

7.742 ± 0.03

5.326 ± 0.023

5.898 ± 0.021

8.491 ± 0.032

1.487 ± 0.012

2.069 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski