Caulochytrium protostelioides

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Chytridiomycota; Chytridiomycota incertae sedis; Chytridiomycetes; Caulochytriales; Caulochytriaceae; Caulochytrium

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6161 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P9X3R3|A0A4P9X3R3_9FUNG Uncharacterized protein OS=Caulochytrium protostelioides OX=1555241 GN=CXG81DRAFT_27595 PE=3 SV=1
MM1 pKa = 7.66GGPEE5 pKa = 4.43RR6 pKa = 11.84PWLTATPFPDD16 pKa = 3.83YY17 pKa = 10.94YY18 pKa = 11.38ALLGLAPPPAAAAAAAVSGAAGPSAAAAAASGHH51 pKa = 6.79DD52 pKa = 4.22GPDD55 pKa = 3.17AAAVRR60 pKa = 11.84AAYY63 pKa = 9.19KK64 pKa = 10.27AAALRR69 pKa = 11.84LHH71 pKa = 7.05PDD73 pKa = 3.1KK74 pKa = 11.33AGVPAPSAAPSAAPLATPATFAQVHH99 pKa = 4.65EE100 pKa = 4.6AYY102 pKa = 10.12RR103 pKa = 11.84VLSDD107 pKa = 3.59PARR110 pKa = 11.84AAAYY114 pKa = 8.52GAAWRR119 pKa = 11.84QIGRR123 pKa = 11.84GSAQAAGQTGAAGIAAPVDD142 pKa = 4.61LDD144 pKa = 4.51DD145 pKa = 4.07MAYY148 pKa = 10.49DD149 pKa = 3.83AAAAAFTAPCRR160 pKa = 11.84CGGVYY165 pKa = 9.78RR166 pKa = 11.84VAEE169 pKa = 4.04HH170 pKa = 6.96ALDD173 pKa = 4.38AGHH176 pKa = 7.34ALVNCSGCSLWIDD189 pKa = 3.19VQYY192 pKa = 11.56AVVPDD197 pKa = 4.02GGGDD201 pKa = 4.72DD202 pKa = 6.23DD203 pKa = 7.13DD204 pKa = 7.75DD205 pKa = 7.68DD206 pKa = 7.65DD207 pKa = 7.68DD208 pKa = 7.65DD209 pKa = 7.65DD210 pKa = 7.65DD211 pKa = 7.68DD212 pKa = 7.69DD213 pKa = 7.44DD214 pKa = 7.44DD215 pKa = 7.17DD216 pKa = 4.85DD217 pKa = 4.87AAVAATAAHH226 pKa = 7.01ASS228 pKa = 3.62

Molecular weight: 22.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P9X4P8|A0A4P9X4P8_9FUNG Uncharacterized protein OS=Caulochytrium protostelioides OX=1555241 GN=CXG81DRAFT_19945 PE=4 SV=1
MM1 pKa = 7.65PRR3 pKa = 11.84GSMLPRR9 pKa = 11.84PRR11 pKa = 11.84LLPRR15 pKa = 11.84QRR17 pKa = 11.84ALGRR21 pKa = 11.84VRR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84LTLTLDD31 pKa = 3.53LRR33 pKa = 11.84GLSPALSSSEE43 pKa = 4.0PPRR46 pKa = 11.84RR47 pKa = 11.84PPFHH51 pKa = 7.08RR52 pKa = 11.84VPPAAAAAAAAAAAAAAAAAVAAAAAAAAAAAAAAAAGPSTARR95 pKa = 11.84PPHH98 pKa = 6.24RR99 pKa = 11.84RR100 pKa = 11.84STSTRR105 pKa = 11.84GGPAGPPWW113 pKa = 4.24

Molecular weight: 11.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6161

0

6161

3431561

50

5593

557.0

59.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.132 ± 0.072

1.051 ± 0.009

5.742 ± 0.029

4.337 ± 0.031

2.69 ± 0.019

6.794 ± 0.037

3.001 ± 0.019

3.238 ± 0.025

2.672 ± 0.031

9.028 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.208 ± 0.012

2.123 ± 0.02

7.834 ± 0.058

3.746 ± 0.027

7.075 ± 0.034

7.447 ± 0.044

6.317 ± 0.028

6.265 ± 0.024

1.235 ± 0.01

2.068 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski