Yoonia litorea

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Yoonia

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3293 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I6MWG7|A0A1I6MWG7_9RHOB Predicted ATP-dependent endonuclease of the OLD family contains P-loop ATPase and TOPRIM domains OS=Yoonia litorea OX=1123755 GN=SAMN05444714_2463 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 9.35NTTYY6 pKa = 10.8LPAVAGFALIATGAVADD23 pKa = 3.79GHH25 pKa = 6.87APVLQVYY32 pKa = 8.54TYY34 pKa = 11.51DD35 pKa = 4.26SFTSDD40 pKa = 3.38WGPGPAIEE48 pKa = 4.34AAFEE52 pKa = 4.13EE53 pKa = 5.08TCACDD58 pKa = 3.68LQFVGAGDD66 pKa = 4.08GAALLARR73 pKa = 11.84LQLEE77 pKa = 4.77GPRR80 pKa = 11.84TDD82 pKa = 3.49ADD84 pKa = 3.37IVLGLDD90 pKa = 3.53TNLTAAARR98 pKa = 11.84EE99 pKa = 4.1TGLFAPHH106 pKa = 6.23GVEE109 pKa = 5.43ADD111 pKa = 3.66LDD113 pKa = 4.35LPIAWTDD120 pKa = 3.38PDD122 pKa = 4.68FLPFDD127 pKa = 3.21WGYY130 pKa = 10.13FAFVANADD138 pKa = 3.53AAAPASLTEE147 pKa = 4.44LAASDD152 pKa = 3.81TSIVIQDD159 pKa = 4.12PRR161 pKa = 11.84SSTPGLGLLMWVKK174 pKa = 10.36AAYY177 pKa = 10.09GDD179 pKa = 4.32DD180 pKa = 3.93AAQVWADD187 pKa = 3.47LADD190 pKa = 4.45NIVTVTPGWSEE201 pKa = 4.05AYY203 pKa = 10.55GMFLEE208 pKa = 5.24GEE210 pKa = 4.06ADD212 pKa = 3.44AVLSYY217 pKa = 7.6TTSPAYY223 pKa = 10.24HH224 pKa = 7.19LIAEE228 pKa = 4.35EE229 pKa = 4.36DD230 pKa = 3.49ASKK233 pKa = 10.95VAWAFDD239 pKa = 3.57EE240 pKa = 4.12GHH242 pKa = 5.58YY243 pKa = 9.52MQVEE247 pKa = 4.5VAGKK251 pKa = 10.04VATTDD256 pKa = 3.42QPEE259 pKa = 4.16LADD262 pKa = 3.39QFLAFMVTDD271 pKa = 4.66AFQSVIPTTNWMYY284 pKa = 9.99PAVVPVEE291 pKa = 3.9GLPAGFEE298 pKa = 4.24TLVTPEE304 pKa = 4.33ASLLLSPEE312 pKa = 3.83EE313 pKa = 4.05AASVRR318 pKa = 11.84DD319 pKa = 3.47AALDD323 pKa = 3.32EE324 pKa = 4.21WRR326 pKa = 11.84NALSQQ331 pKa = 3.37

Molecular weight: 35.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I6MZG7|A0A1I6MZG7_9RHOB Exodeoxyribonuclease III OS=Yoonia litorea OX=1123755 GN=SAMN05444714_2740 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 8.99NRR15 pKa = 11.84HH16 pKa = 3.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.27SGRR28 pKa = 11.84KK29 pKa = 8.85IINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.31GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3293

0

3293

1020791

29

7024

310.0

33.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.986 ± 0.057

0.86 ± 0.015

6.363 ± 0.05

5.894 ± 0.052

3.887 ± 0.035

8.506 ± 0.049

1.997 ± 0.027

5.538 ± 0.033

3.385 ± 0.041

9.707 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.813 ± 0.029

2.797 ± 0.028

4.852 ± 0.033

3.319 ± 0.022

6.206 ± 0.048

5.205 ± 0.031

5.669 ± 0.047

7.36 ± 0.036

1.393 ± 0.021

2.262 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski