Carboxydocella sporoproducens DSM 16521

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Eubacteriales incertae sedis; Clostridiales Family XVI. Incertae Sedis; Carboxydocella; Carboxydocella sporoproducens

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2660 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4RW74|A0A1T4RW74_9FIRM Serine dehydratase alpha chain OS=Carboxydocella sporoproducens DSM 16521 OX=1121270 GN=SAMN02745885_02301 PE=4 SV=1
MM1 pKa = 7.27KK2 pKa = 10.64VKK4 pKa = 10.33VDD6 pKa = 3.67PDD8 pKa = 3.63LCISCGACVSTCPDD22 pKa = 3.01VYY24 pKa = 11.34DD25 pKa = 3.9WDD27 pKa = 4.76DD28 pKa = 3.46EE29 pKa = 4.61GKK31 pKa = 10.65AKK33 pKa = 10.71AIVDD37 pKa = 4.1EE38 pKa = 4.69VPDD41 pKa = 4.39DD42 pKa = 4.55LEE44 pKa = 6.43DD45 pKa = 3.55EE46 pKa = 4.22ARR48 pKa = 11.84EE49 pKa = 3.96ALEE52 pKa = 4.21NCPTDD57 pKa = 5.17AIAEE61 pKa = 4.3VV62 pKa = 3.49

Molecular weight: 6.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4SA52|A0A1T4SA52_9FIRM 30S ribosomal protein S14 type Z OS=Carboxydocella sporoproducens DSM 16521 OX=1121270 GN=rpsZ PE=3 SV=1
MM1 pKa = 7.3EE2 pKa = 5.66RR3 pKa = 11.84YY4 pKa = 8.97AVPVHH9 pKa = 6.34CAAALVIGRR18 pKa = 11.84RR19 pKa = 11.84AMGFRR24 pKa = 11.84EE25 pKa = 4.1RR26 pKa = 11.84VTKK29 pKa = 10.16EE30 pKa = 3.49LQQLVTQIKK39 pKa = 9.99QDD41 pKa = 3.7LTCKK45 pKa = 10.23VNPNIPRR52 pKa = 11.84EE53 pKa = 4.37GKK55 pKa = 10.14GMTRR59 pKa = 11.84RR60 pKa = 11.84VRR62 pKa = 11.84ACLRR66 pKa = 11.84WLDD69 pKa = 4.25GKK71 pKa = 11.05LLLHH75 pKa = 6.64NGFARR80 pKa = 11.84QQQEE84 pKa = 3.48AYY86 pKa = 9.95YY87 pKa = 10.43SVWHH91 pKa = 6.73DD92 pKa = 3.86LKK94 pKa = 11.23KK95 pKa = 10.62LALSLRR101 pKa = 4.04

Molecular weight: 11.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2660

0

2660

791629

12

2792

297.6

33.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.165 ± 0.056

1.128 ± 0.023

4.27 ± 0.034

7.235 ± 0.055

3.568 ± 0.032

7.847 ± 0.045

1.801 ± 0.023

6.619 ± 0.047

5.556 ± 0.045

11.266 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.29 ± 0.022

3.48 ± 0.034

4.453 ± 0.033

4.441 ± 0.037

5.693 ± 0.043

4.457 ± 0.039

4.882 ± 0.041

7.324 ± 0.036

1.403 ± 0.024

3.123 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski