Janibacter indicus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Intrasporangiaceae; Janibacter

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3139 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3MH18|A0A1L3MH18_9MICO Amino acid/amide ABC transporter substrate-binding protein HAAT family OS=Janibacter indicus OX=857417 GN=ASJ30_08340 PE=4 SV=1
MM1 pKa = 8.07DD2 pKa = 4.72LTRR5 pKa = 11.84PTAPAPYY12 pKa = 10.22DD13 pKa = 4.02LLPPTATFEE22 pKa = 4.33VTSEE26 pKa = 4.18SFTDD30 pKa = 4.63GDD32 pKa = 4.86DD33 pKa = 3.73LPEE36 pKa = 4.27AQVFDD41 pKa = 3.75DD42 pKa = 3.87WGFSGGNLSPQLSWSGAPEE61 pKa = 4.05GTKK64 pKa = 10.49GYY66 pKa = 10.58AVSCFDD72 pKa = 4.78PDD74 pKa = 3.49APTPAGFWHH83 pKa = 5.87WTVVGLPADD92 pKa = 3.97TTSLPEE98 pKa = 3.98GAGVEE103 pKa = 4.65GGAQLPEE110 pKa = 4.36GAFMTATDD118 pKa = 4.05YY119 pKa = 8.59GTKK122 pKa = 10.38AFGGAAPPQGDD133 pKa = 3.19IAHH136 pKa = 6.77RR137 pKa = 11.84YY138 pKa = 7.81VFAVHH143 pKa = 7.0ALDD146 pKa = 4.37TDD148 pKa = 3.85DD149 pKa = 6.35LGIDD153 pKa = 3.98DD154 pKa = 5.19SVSCTVAAFNYY165 pKa = 8.8LQHH168 pKa = 6.57TIGRR172 pKa = 11.84AVITGMYY179 pKa = 9.99RR180 pKa = 11.84SS181 pKa = 3.72

Molecular weight: 18.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3MKP9|A0A1L3MKP9_9MICO Uncharacterized protein OS=Janibacter indicus OX=857417 GN=ASJ30_16145 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSNRR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.45GRR40 pKa = 11.84SKK42 pKa = 10.62ISAA45 pKa = 3.55

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3139

0

3139

1004716

32

1594

320.1

34.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.905 ± 0.065

0.676 ± 0.011

6.605 ± 0.036

6.018 ± 0.046

2.598 ± 0.026

9.331 ± 0.041

2.344 ± 0.024

3.669 ± 0.029

2.033 ± 0.034

10.109 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.913 ± 0.019

1.562 ± 0.023

5.492 ± 0.034

2.842 ± 0.025

7.641 ± 0.049

5.28 ± 0.032

6.319 ± 0.032

9.338 ± 0.043

1.543 ± 0.02

1.783 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski