Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter pasteurianus

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2906 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C7JH16|C7JH16_ACEP3 Phosphoribosyl-ATP pyrophosphatase OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) OX=634452 GN=hisE PE=3 SV=1
MM1 pKa = 7.87PIITVVGASGNIQVTVDD18 pKa = 3.73GAQNSALYY26 pKa = 10.04NQATDD31 pKa = 4.36LSNQLSSVISTLDD44 pKa = 3.38AQNLSAGDD52 pKa = 3.71TTFSDD57 pKa = 4.07SNKK60 pKa = 10.12AGYY63 pKa = 10.04GVITSAGSYY72 pKa = 9.18RR73 pKa = 11.84VAGNVEE79 pKa = 3.96YY80 pKa = 11.0LGIGSDD86 pKa = 3.8ARR88 pKa = 11.84SQPLIALNGQVTVDD102 pKa = 3.48AVGVTSKK109 pKa = 11.26NMTILGGTNTGIAFYY124 pKa = 10.44AGSQSGQFLAGAGANLFEE142 pKa = 5.68GNSQYY147 pKa = 11.37DD148 pKa = 3.29AGNWSIMTGNGNDD161 pKa = 3.78TVNSGAGNNTISAGLGHH178 pKa = 5.91NTIDD182 pKa = 4.28LGSGMNYY189 pKa = 8.49VHH191 pKa = 7.38SDD193 pKa = 3.33GQDD196 pKa = 3.18TITATSGRR204 pKa = 11.84QSVTLSGSSSTVQLSDD220 pKa = 2.93NSLVVDD226 pKa = 4.91ANSSQQITVGGASTVTGGSLDD247 pKa = 3.89YY248 pKa = 11.07INFSGATGTVEE259 pKa = 4.47GGQNSTISAAHH270 pKa = 6.63GNLQTEE276 pKa = 4.54NTDD279 pKa = 3.24SALINVSDD287 pKa = 3.92NLTFIGGTGEE297 pKa = 4.08TTITAGHH304 pKa = 5.78ATIFGSNGLDD314 pKa = 2.93IHH316 pKa = 7.11VSASQQGTIDD326 pKa = 3.46GAGANNLFVANDD338 pKa = 3.66GNEE341 pKa = 4.25TLDD344 pKa = 3.89GASSAFGFQAFGNNAGTTGTQTFIGGTASDD374 pKa = 3.79TLVAGVGNATLEE386 pKa = 4.6GGSGAANVFGFRR398 pKa = 11.84NSVAGADD405 pKa = 3.68YY406 pKa = 9.44TIQDD410 pKa = 4.0FGSAANNSVLLVDD423 pKa = 3.86YY424 pKa = 10.2DD425 pKa = 3.71YY426 pKa = 11.63TKK428 pKa = 11.27ASFQTEE434 pKa = 4.28VLDD437 pKa = 4.39KK438 pKa = 10.32ATHH441 pKa = 6.1NGGNTTITLSDD452 pKa = 3.42HH453 pKa = 5.64SQITFVNVDD462 pKa = 3.93TLNEE466 pKa = 4.04NQFSGLKK473 pKa = 9.94

Molecular weight: 47.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C7JEJ0|C7JEJ0_ACEP3 Uncharacterized protein OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) OX=634452 GN=APA01_06710 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.48GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.03IIGNRR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.41GRR39 pKa = 11.84KK40 pKa = 8.72RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2906

0

2906

941337

26

2008

323.9

35.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.331 ± 0.053

1.135 ± 0.016

5.226 ± 0.035

5.313 ± 0.057

3.64 ± 0.03

8.019 ± 0.05

2.464 ± 0.023

5.072 ± 0.034

3.637 ± 0.035

10.178 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.621 ± 0.022

3.062 ± 0.033

5.389 ± 0.041

3.95 ± 0.03

6.453 ± 0.051

5.799 ± 0.035

5.75 ± 0.038

7.138 ± 0.041

1.455 ± 0.019

2.367 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski