Amino acid dipepetide frequency for Magnaporthe oryzae virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.048AlaAla: 12.048 ± 0.915
1.268AlaCys: 1.268 ± 0.049
4.439AlaAsp: 4.439 ± 2.075
2.536AlaGlu: 2.536 ± 0.997
6.975AlaPhe: 6.975 ± 1.618
9.512AlaGly: 9.512 ± 2.615
3.171AlaHis: 3.171 ± 2.124
6.341AlaIle: 6.341 ± 1.144
1.268AlaLys: 1.268 ± 0.049
13.316AlaLeu: 13.316 ± 2.762
0.0AlaMet: 0.0 ± 0.0
2.536AlaAsn: 2.536 ± 0.098
11.414AlaPro: 11.414 ± 4.036
3.805AlaGln: 3.805 ± 1.651
8.244AlaArg: 8.244 ± 2.827
7.609AlaSer: 7.609 ± 0.605
6.341AlaThr: 6.341 ± 3.84
8.878AlaVal: 8.878 ± 2.141
1.902AlaTrp: 1.902 ± 0.376
0.634AlaTyr: 0.634 ± 0.425
0.0AlaXaa: 0.0 ± 0.0
Cys
2.536CysAla: 2.536 ± 0.997
0.0CysCys: 0.0 ± 0.0
0.634CysAsp: 0.634 ± 0.425
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.634CysGly: 0.634 ± 0.474
0.0CysHis: 0.0 ± 0.0
0.634CysIle: 0.634 ± 0.474
0.634CysLys: 0.634 ± 0.425
1.902CysLeu: 1.902 ± 0.376
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.268CysPro: 1.268 ± 0.049
0.0CysGln: 0.0 ± 0.0
0.634CysArg: 0.634 ± 0.425
1.268CysSer: 1.268 ± 0.85
1.268CysThr: 1.268 ± 0.85
1.902CysVal: 1.902 ± 1.275
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.341AspAla: 6.341 ± 0.654
1.268AspCys: 1.268 ± 0.948
4.439AspAsp: 4.439 ± 0.278
0.634AspGlu: 0.634 ± 0.425
1.902AspPhe: 1.902 ± 1.275
2.536AspGly: 2.536 ± 0.098
1.902AspHis: 1.902 ± 1.275
1.268AspIle: 1.268 ± 0.948
0.0AspLys: 0.0 ± 0.0
6.341AspLeu: 6.341 ± 0.654
0.634AspMet: 0.634 ± 0.425
0.634AspAsn: 0.634 ± 0.474
5.073AspPro: 5.073 ± 0.196
2.536AspGln: 2.536 ± 0.098
0.0AspArg: 0.0 ± 0.0
6.975AspSer: 6.975 ± 1.618
3.171AspThr: 3.171 ± 0.327
3.171AspVal: 3.171 ± 0.327
0.634AspTrp: 0.634 ± 0.425
3.171AspTyr: 3.171 ± 1.226
0.0AspXaa: 0.0 ± 0.0
Glu
4.439GluAla: 4.439 ± 1.177
0.0GluCys: 0.0 ± 0.0
0.634GluAsp: 0.634 ± 0.474
1.902GluGlu: 1.902 ± 0.376
1.268GluPhe: 1.268 ± 0.049
1.268GluGly: 1.268 ± 0.049
1.268GluHis: 1.268 ± 0.049
3.805GluIle: 3.805 ± 1.651
0.634GluLys: 0.634 ± 0.425
3.171GluLeu: 3.171 ± 0.327
0.0GluMet: 0.0 ± 0.326
0.634GluAsn: 0.634 ± 0.425
3.171GluPro: 3.171 ± 0.327
0.0GluGln: 0.0 ± 0.0
1.902GluArg: 1.902 ± 1.422
3.805GluSer: 3.805 ± 0.147
1.268GluThr: 1.268 ± 0.948
0.634GluVal: 0.634 ± 0.474
0.0GluTrp: 0.0 ± 0.0
1.268GluTyr: 1.268 ± 0.85
0.0GluXaa: 0.0 ± 0.0
Phe
7.609PheAla: 7.609 ± 1.193
0.0PheCys: 0.0 ± 0.0
2.536PheAsp: 2.536 ± 0.098
0.634PheGlu: 0.634 ± 0.425
1.902PhePhe: 1.902 ± 0.523
4.439PheGly: 4.439 ± 1.177
0.634PheHis: 0.634 ± 0.474
1.268PheIle: 1.268 ± 0.049
0.634PheLys: 0.634 ± 0.474
4.439PheLeu: 4.439 ± 0.278
0.0PheMet: 0.0 ± 0.0
1.268PheAsn: 1.268 ± 0.85
3.171PhePro: 3.171 ± 0.327
0.0PheGln: 0.0 ± 0.0
1.902PheArg: 1.902 ± 0.523
6.341PheSer: 6.341 ± 3.84
1.902PheThr: 1.902 ± 0.523
3.171PheVal: 3.171 ± 0.572
0.634PheTrp: 0.634 ± 0.474
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
10.146GlyAla: 10.146 ± 2.19
0.634GlyCys: 0.634 ± 0.425
1.902GlyAsp: 1.902 ± 0.376
3.171GlyGlu: 3.171 ± 1.471
2.536GlyPhe: 2.536 ± 0.098
7.609GlyGly: 7.609 ± 2.99
1.902GlyHis: 1.902 ± 1.275
1.268GlyIle: 1.268 ± 0.049
0.634GlyLys: 0.634 ± 0.425
9.512GlyLeu: 9.512 ± 0.817
1.268GlyMet: 1.268 ± 0.049
1.268GlyAsn: 1.268 ± 0.049
5.707GlyPro: 5.707 ± 2.468
3.171GlyGln: 3.171 ± 2.369
8.244GlyArg: 8.244 ± 1.928
5.073GlySer: 5.073 ± 0.703
5.707GlyThr: 5.707 ± 1.128
6.341GlyVal: 6.341 ± 0.654
0.0GlyTrp: 0.0 ± 0.0
2.536GlyTyr: 2.536 ± 0.801
0.0GlyXaa: 0.0 ± 0.0
His
3.171HisAla: 3.171 ± 1.226
1.902HisCys: 1.902 ± 1.275
0.634HisAsp: 0.634 ± 0.425
1.902HisGlu: 1.902 ± 0.523
1.902HisPhe: 1.902 ± 0.523
1.902HisGly: 1.902 ± 0.376
0.634HisHis: 0.634 ± 0.425
0.634HisIle: 0.634 ± 0.425
0.0HisLys: 0.0 ± 0.0
1.268HisLeu: 1.268 ± 0.049
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.902HisPro: 1.902 ± 1.275
0.634HisGln: 0.634 ± 0.474
1.268HisArg: 1.268 ± 0.85
1.268HisSer: 1.268 ± 0.85
3.171HisThr: 3.171 ± 1.226
1.902HisVal: 1.902 ± 1.275
0.634HisTrp: 0.634 ± 0.425
0.634HisTyr: 0.634 ± 0.474
0.0HisXaa: 0.0 ± 0.0
Ile
4.439IleAla: 4.439 ± 0.621
0.0IleCys: 0.0 ± 0.0
3.805IleAsp: 3.805 ± 0.752
0.634IleGlu: 0.634 ± 0.474
1.268IlePhe: 1.268 ± 0.85
3.171IleGly: 3.171 ± 0.572
1.268IleHis: 1.268 ± 0.049
0.0IleIle: 0.0 ± 0.0
0.634IleLys: 0.634 ± 0.425
5.707IleLeu: 5.707 ± 1.128
0.0IleMet: 0.0 ± 0.0
0.0IleAsn: 0.0 ± 0.0
3.805IlePro: 3.805 ± 0.752
1.902IleGln: 1.902 ± 1.275
1.902IleArg: 1.902 ± 1.275
1.268IleSer: 1.268 ± 0.049
1.902IleThr: 1.902 ± 0.376
5.707IleVal: 5.707 ± 2.468
0.0IleTrp: 0.0 ± 0.0
0.634IleTyr: 0.634 ± 0.425
0.0IleXaa: 0.0 ± 0.0
Lys
3.171LysAla: 3.171 ± 0.572
0.0LysCys: 0.0 ± 0.0
1.268LysAsp: 1.268 ± 0.85
1.268LysGlu: 1.268 ± 0.049
0.634LysPhe: 0.634 ± 0.425
1.902LysGly: 1.902 ± 0.376
0.634LysHis: 0.634 ± 0.425
0.634LysIle: 0.634 ± 0.425
0.634LysLys: 0.634 ± 0.474
0.634LysLeu: 0.634 ± 0.425
0.0LysMet: 0.0 ± 0.0
0.0LysAsn: 0.0 ± 0.0
0.634LysPro: 0.634 ± 0.474
0.634LysGln: 0.634 ± 0.425
0.0LysArg: 0.0 ± 0.0
2.536LysSer: 2.536 ± 0.801
1.902LysThr: 1.902 ± 0.523
0.634LysVal: 0.634 ± 0.425
1.268LysTrp: 1.268 ± 0.049
1.902LysTyr: 1.902 ± 0.376
0.0LysXaa: 0.0 ± 0.0
Leu
13.316LeuAla: 13.316 ± 1.863
1.268LeuCys: 1.268 ± 0.85
7.609LeuAsp: 7.609 ± 1.503
4.439LeuGlu: 4.439 ± 1.177
1.268LeuPhe: 1.268 ± 0.049
9.512LeuGly: 9.512 ± 0.981
1.268LeuHis: 1.268 ± 0.948
1.902LeuIle: 1.902 ± 0.376
1.902LeuLys: 1.902 ± 0.376
9.512LeuLeu: 9.512 ± 0.981
1.268LeuMet: 1.268 ± 0.85
5.707LeuAsn: 5.707 ± 1.128
8.244LeuPro: 8.244 ± 2.566
1.268LeuGln: 1.268 ± 0.049
10.78LeuArg: 10.78 ± 0.932
8.878LeuSer: 8.878 ± 1.242
5.707LeuThr: 5.707 ± 0.229
7.609LeuVal: 7.609 ± 1.193
1.268LeuTrp: 1.268 ± 0.948
0.0LeuTyr: 0.0 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.268MetAla: 1.268 ± 0.049
0.634MetCys: 0.634 ± 0.425
1.902MetAsp: 1.902 ± 1.275
0.0MetGlu: 0.0 ± 0.0
0.634MetPhe: 0.634 ± 0.474
0.0MetGly: 0.0 ± 0.0
0.634MetHis: 0.634 ± 0.425
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.268MetLeu: 1.268 ± 0.85
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.268MetPro: 1.268 ± 0.948
1.268MetGln: 1.268 ± 0.049
1.268MetArg: 1.268 ± 0.049
1.268MetSer: 1.268 ± 0.85
1.268MetThr: 1.268 ± 0.85
0.634MetVal: 0.634 ± 0.474
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.902AsnAla: 1.902 ± 0.376
0.0AsnCys: 0.0 ± 0.0
0.634AsnAsp: 0.634 ± 0.474
0.0AsnGlu: 0.0 ± 0.0
1.902AsnPhe: 1.902 ± 1.422
3.171AsnGly: 3.171 ± 2.124
0.0AsnHis: 0.0 ± 0.0
0.634AsnIle: 0.634 ± 0.425
0.0AsnLys: 0.0 ± 0.0
1.268AsnLeu: 1.268 ± 0.948
0.634AsnMet: 0.634 ± 0.474
0.0AsnAsn: 0.0 ± 0.0
1.268AsnPro: 1.268 ± 0.049
0.0AsnGln: 0.0 ± 0.0
0.0AsnArg: 0.0 ± 0.0
4.439AsnSer: 4.439 ± 1.177
1.268AsnThr: 1.268 ± 0.049
3.805AsnVal: 3.805 ± 1.651
1.268AsnTrp: 1.268 ± 0.85
0.634AsnTyr: 0.634 ± 0.474
0.0AsnXaa: 0.0 ± 0.0
Pro
10.146ProAla: 10.146 ± 3.987
2.536ProCys: 2.536 ± 0.997
3.805ProAsp: 3.805 ± 1.046
1.902ProGlu: 1.902 ± 0.376
1.268ProPhe: 1.268 ± 0.948
6.341ProGly: 6.341 ± 2.043
1.902ProHis: 1.902 ± 0.376
1.902ProIle: 1.902 ± 0.376
3.171ProLys: 3.171 ± 1.471
7.609ProLeu: 7.609 ± 0.294
1.268ProMet: 1.268 ± 0.049
1.268ProAsn: 1.268 ± 0.948
6.975ProPro: 6.975 ± 0.18
1.268ProGln: 1.268 ± 0.049
2.536ProArg: 2.536 ± 0.098
3.805ProSer: 3.805 ± 0.147
9.512ProThr: 9.512 ± 2.615
9.512ProVal: 9.512 ± 0.981
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.902GlnAla: 1.902 ± 0.523
0.0GlnCys: 0.0 ± 0.0
0.634GlnAsp: 0.634 ± 0.474
0.0GlnGlu: 0.0 ± 0.0
1.902GlnPhe: 1.902 ± 0.376
1.268GlnGly: 1.268 ± 0.049
1.268GlnHis: 1.268 ± 0.049
1.902GlnIle: 1.902 ± 0.523
0.634GlnLys: 0.634 ± 0.474
3.171GlnLeu: 3.171 ± 0.572
0.0GlnMet: 0.0 ± 0.0
1.268GlnAsn: 1.268 ± 0.049
0.0GlnPro: 0.0 ± 0.0
0.0GlnGln: 0.0 ± 0.0
1.268GlnArg: 1.268 ± 0.948
2.536GlnSer: 2.536 ± 0.801
0.634GlnThr: 0.634 ± 0.425
1.268GlnVal: 1.268 ± 0.85
0.634GlnTrp: 0.634 ± 0.425
0.634GlnTyr: 0.634 ± 0.474
0.0GlnXaa: 0.0 ± 0.0
Arg
5.073ArgAla: 5.073 ± 0.196
1.268ArgCys: 1.268 ± 0.85
3.805ArgAsp: 3.805 ± 0.147
2.536ArgGlu: 2.536 ± 1.7
1.902ArgPhe: 1.902 ± 0.523
6.975ArgGly: 6.975 ± 0.18
3.171ArgHis: 3.171 ± 1.226
3.805ArgIle: 3.805 ± 0.147
0.634ArgLys: 0.634 ± 0.474
7.609ArgLeu: 7.609 ± 1.503
0.634ArgMet: 0.634 ± 0.425
0.634ArgAsn: 0.634 ± 0.425
3.805ArgPro: 3.805 ± 1.046
2.536ArgGln: 2.536 ± 0.997
4.439ArgArg: 4.439 ± 0.278
7.609ArgSer: 7.609 ± 2.402
3.805ArgThr: 3.805 ± 2.549
4.439ArgVal: 4.439 ± 0.621
0.634ArgTrp: 0.634 ± 0.425
0.634ArgTyr: 0.634 ± 0.474
0.0ArgXaa: 0.0 ± 0.0
Ser
9.512SerAla: 9.512 ± 0.817
1.902SerCys: 1.902 ± 0.376
4.439SerAsp: 4.439 ± 1.52
5.073SerGlu: 5.073 ± 1.601
2.536SerPhe: 2.536 ± 0.997
6.975SerGly: 6.975 ± 1.618
2.536SerHis: 2.536 ± 1.7
3.805SerIle: 3.805 ± 0.752
2.536SerLys: 2.536 ± 1.7
10.146SerLeu: 10.146 ± 0.392
2.536SerMet: 2.536 ± 0.801
2.536SerAsn: 2.536 ± 0.997
6.975SerPro: 6.975 ± 1.618
0.634SerGln: 0.634 ± 0.425
7.609SerArg: 7.609 ± 1.503
13.951SerSer: 13.951 ± 1.438
8.878SerThr: 8.878 ± 1.242
5.073SerVal: 5.073 ± 2.892
2.536SerTrp: 2.536 ± 0.801
3.171SerTyr: 3.171 ± 2.124
0.0SerXaa: 0.0 ± 0.0
Thr
5.073ThrAla: 5.073 ± 1.994
0.0ThrCys: 0.0 ± 0.0
4.439ThrAsp: 4.439 ± 0.621
1.268ThrGlu: 1.268 ± 0.049
6.341ThrPhe: 6.341 ± 0.654
5.073ThrGly: 5.073 ± 0.703
0.634ThrHis: 0.634 ± 0.474
3.171ThrIle: 3.171 ± 0.327
1.268ThrLys: 1.268 ± 0.85
5.073ThrLeu: 5.073 ± 1.601
0.0ThrMet: 0.0 ± 0.0
0.634ThrAsn: 0.634 ± 0.425
4.439ThrPro: 4.439 ± 1.52
0.0ThrGln: 0.0 ± 0.0
7.609ThrArg: 7.609 ± 0.294
6.341ThrSer: 6.341 ± 1.144
5.073ThrThr: 5.073 ± 0.703
8.878ThrVal: 8.878 ± 1.242
0.0ThrTrp: 0.0 ± 0.0
2.536ThrTyr: 2.536 ± 0.801
0.0ThrXaa: 0.0 ± 0.0
Val
7.609ValAla: 7.609 ± 0.605
0.0ValCys: 0.0 ± 0.0
3.171ValAsp: 3.171 ± 1.471
3.171ValGlu: 3.171 ± 1.471
5.707ValPhe: 5.707 ± 2.468
3.805ValGly: 3.805 ± 0.147
1.268ValHis: 1.268 ± 0.85
2.536ValIle: 2.536 ± 0.098
3.805ValLys: 3.805 ± 1.651
7.609ValLeu: 7.609 ± 1.193
2.536ValMet: 2.536 ± 0.383
3.171ValAsn: 3.171 ± 1.226
5.073ValPro: 5.073 ± 1.095
1.268ValGln: 1.268 ± 0.948
3.171ValArg: 3.171 ± 0.327
14.585ValSer: 14.585 ± 1.912
3.171ValThr: 3.171 ± 0.572
1.902ValVal: 1.902 ± 1.422
0.0ValTrp: 0.0 ± 0.0
3.805ValTyr: 3.805 ± 1.651
0.0ValXaa: 0.0 ± 0.0
Trp
0.634TrpAla: 0.634 ± 0.425
0.634TrpCys: 0.634 ± 0.425
0.634TrpAsp: 0.634 ± 0.425
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
1.902TrpGly: 1.902 ± 0.523
0.634TrpHis: 0.634 ± 0.474
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.634TrpLeu: 0.634 ± 0.425
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
1.268TrpPro: 1.268 ± 0.85
0.0TrpGln: 0.0 ± 0.0
1.268TrpArg: 1.268 ± 0.049
1.268TrpSer: 1.268 ± 0.85
1.268TrpThr: 1.268 ± 0.049
0.634TrpVal: 0.634 ± 0.474
0.634TrpTrp: 0.634 ± 0.425
0.634TrpTyr: 0.634 ± 0.425
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.902TyrAla: 1.902 ± 1.275
0.0TyrCys: 0.0 ± 0.0
1.268TyrAsp: 1.268 ± 0.85
0.634TyrGlu: 0.634 ± 0.425
0.634TyrPhe: 0.634 ± 0.425
0.634TyrGly: 0.634 ± 0.425
0.634TyrHis: 0.634 ± 0.425
2.536TyrIle: 2.536 ± 1.7
1.268TyrLys: 1.268 ± 0.049
2.536TyrLeu: 2.536 ± 0.997
1.902TyrMet: 1.902 ± 1.275
1.268TyrAsn: 1.268 ± 0.85
1.268TyrPro: 1.268 ± 0.049
0.0TyrGln: 0.0 ± 0.0
1.902TyrArg: 1.902 ± 0.376
2.536TyrSer: 2.536 ± 0.098
0.634TyrThr: 0.634 ± 0.425
1.268TyrVal: 1.268 ± 0.049
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1578 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski