Capybara microvirus Cap1_SP_66

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7J6|A0A4P8W7J6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_66 OX=2584788 PE=4 SV=1
MM1 pKa = 7.42TYY3 pKa = 10.53SIIALYY9 pKa = 10.25EE10 pKa = 4.11DD11 pKa = 4.41EE12 pKa = 5.43NEE14 pKa = 4.31CLHH17 pKa = 6.96QITLFNRR24 pKa = 11.84LCSLDD29 pKa = 3.45SALPLLKK36 pKa = 10.72NIFQTPSDD44 pKa = 4.38YY45 pKa = 10.55IACDD49 pKa = 3.32SLVLVDD55 pKa = 6.0CYY57 pKa = 10.94IVDD60 pKa = 3.83CEE62 pKa = 4.25GFRR65 pKa = 11.84VRR67 pKa = 11.84VSKK70 pKa = 11.17NN71 pKa = 2.82

Molecular weight: 8.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W3Y1|A0A4P8W3Y1_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_66 OX=2584788 PE=3 SV=1
MM1 pKa = 7.27SCSNPTYY8 pKa = 10.47FFNKK12 pKa = 9.81KK13 pKa = 10.17FIQRR17 pKa = 11.84YY18 pKa = 7.74YY19 pKa = 10.03SLVDD23 pKa = 3.18GFHH26 pKa = 5.86YY27 pKa = 10.73HH28 pKa = 6.43GVDD31 pKa = 3.52YY32 pKa = 10.15PFKK35 pKa = 10.56PSVSDD40 pKa = 3.36VASIFDD46 pKa = 3.8EE47 pKa = 5.25FKK49 pKa = 10.87AGQTFDD55 pKa = 3.16FRR57 pKa = 11.84LYY59 pKa = 10.01LTGAYY64 pKa = 10.25DD65 pKa = 3.51GDD67 pKa = 4.44YY68 pKa = 10.59VVHH71 pKa = 5.96YY72 pKa = 8.16PINPFLVIPCHH83 pKa = 5.78NCPSCLHH90 pKa = 7.05DD91 pKa = 3.85KK92 pKa = 10.64QATKK96 pKa = 10.64SALIALEE103 pKa = 4.39SVGKK107 pKa = 9.33PSPLFVTLTYY117 pKa = 10.82ADD119 pKa = 3.9EE120 pKa = 5.31PINGVSVRR128 pKa = 11.84DD129 pKa = 3.44VQLFLKK135 pKa = 10.16RR136 pKa = 11.84LRR138 pKa = 11.84KK139 pKa = 8.74MFPQSKK145 pKa = 9.36IRR147 pKa = 11.84YY148 pKa = 7.82HH149 pKa = 5.9CTAEE153 pKa = 4.37YY154 pKa = 10.68GSHH157 pKa = 6.22TYY159 pKa = 9.92RR160 pKa = 11.84PHH162 pKa = 4.93YY163 pKa = 9.87HH164 pKa = 6.75LLIFGLPLEE173 pKa = 4.59SEE175 pKa = 4.4QFVEE179 pKa = 5.12SIKK182 pKa = 10.81SRR184 pKa = 11.84YY185 pKa = 8.37NVPNYY190 pKa = 9.3PVGYY194 pKa = 9.74GYY196 pKa = 11.25YY197 pKa = 9.43LDD199 pKa = 3.92YY200 pKa = 10.84SIRR203 pKa = 11.84QAWQLGITHH212 pKa = 6.19SRR214 pKa = 11.84VVLNPAVIRR223 pKa = 11.84YY224 pKa = 7.26VSKK227 pKa = 9.85YY228 pKa = 7.4TSKK231 pKa = 10.81QSDD234 pKa = 3.73VLLGKK239 pKa = 10.02NPPFMLQSTHH249 pKa = 6.21NGGLGASVLRR259 pKa = 11.84DD260 pKa = 3.25YY261 pKa = 10.96IINNNFDD268 pKa = 4.29SNCGISLNGRR278 pKa = 11.84YY279 pKa = 7.43FTIPSNLFNQRR290 pKa = 11.84VCLSINRR297 pKa = 11.84YY298 pKa = 8.4IGYY301 pKa = 9.69YY302 pKa = 8.22WLLVMKK308 pKa = 10.53ALDD311 pKa = 4.23HH312 pKa = 7.26LSLLPDD318 pKa = 4.27LPPIIMQAVHH328 pKa = 6.57SYY330 pKa = 9.89IVPRR334 pKa = 11.84GTNKK338 pKa = 10.11SLEE341 pKa = 3.95FLEE344 pKa = 4.75YY345 pKa = 10.48INDD348 pKa = 3.39EE349 pKa = 4.43TFPARR354 pKa = 11.84YY355 pKa = 8.83IPAVSARR362 pKa = 11.84FNDD365 pKa = 4.43DD366 pKa = 3.18YY367 pKa = 11.57AQKK370 pKa = 10.86LEE372 pKa = 3.83QFLKK376 pKa = 10.39IKK378 pKa = 10.67HH379 pKa = 5.37EE380 pKa = 5.0FIAKK384 pKa = 8.46RR385 pKa = 11.84TIPEE389 pKa = 3.91VPNQNFLQNYY399 pKa = 7.78RR400 pKa = 11.84AEE402 pKa = 4.16IQLNRR407 pKa = 11.84QKK409 pKa = 10.93EE410 pKa = 4.27KK411 pKa = 11.23EE412 pKa = 4.09KK413 pKa = 11.13LL414 pKa = 3.49

Molecular weight: 47.93 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1777

71

750

296.2

33.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.246 ± 0.693

1.463 ± 0.288

5.909 ± 0.371

4.333 ± 0.746

4.502 ± 1.022

5.459 ± 0.606

2.195 ± 0.493

6.078 ± 0.243

5.065 ± 0.413

9.06 ± 0.844

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.589 ± 0.42

6.64 ± 0.586

5.065 ± 0.597

4.952 ± 0.629

4.389 ± 0.271

7.822 ± 0.532

5.796 ± 0.654

5.965 ± 0.273

0.732 ± 0.193

5.74 ± 0.957
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski