Desulfococcus multivorans DSM 2059

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus; Desulfococcus multivorans

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3844 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S7UXY4|S7UXY4_DESML TPR_REGION domain-containing protein OS=Desulfococcus multivorans DSM 2059 OX=1121405 GN=dsmv_2765 PE=4 SV=1
MM1 pKa = 7.68AEE3 pKa = 4.0KK4 pKa = 10.81NMNRR8 pKa = 11.84WEE10 pKa = 4.46CPCGYY15 pKa = 9.82IYY17 pKa = 10.81DD18 pKa = 4.24PAEE21 pKa = 4.2GDD23 pKa = 3.49AEE25 pKa = 4.24NNILVGTSFDD35 pKa = 5.03DD36 pKa = 6.16LPDD39 pKa = 3.95DD40 pKa = 3.81WTCPKK45 pKa = 10.47CGAEE49 pKa = 3.94KK50 pKa = 10.82EE51 pKa = 4.34FFEE54 pKa = 4.63EE55 pKa = 5.53LRR57 pKa = 11.84DD58 pKa = 3.68

Molecular weight: 6.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S7TDM7|S7TDM7_DESML Dynamin family protein OS=Desulfococcus multivorans DSM 2059 OX=1121405 GN=dsmv_3262 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.17QPSKK9 pKa = 9.15IKK11 pKa = 10.36RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 6.37GFLKK20 pKa = 10.63RR21 pKa = 11.84MSTKK25 pKa = 10.39AGRR28 pKa = 11.84NIIKK32 pKa = 10.23RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.88GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3844

0

3844

1279499

30

2917

332.9

36.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.379 ± 0.044

1.224 ± 0.021

5.769 ± 0.03

6.247 ± 0.034

4.224 ± 0.026

7.868 ± 0.035

2.143 ± 0.02

6.516 ± 0.027

4.603 ± 0.04

9.696 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.752 ± 0.021

3.116 ± 0.024

4.864 ± 0.028

2.832 ± 0.02

7.102 ± 0.036

5.282 ± 0.027

5.236 ± 0.027

7.206 ± 0.032

1.15 ± 0.014

2.793 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski