Amino acid dipepetide frequency for Zahedan rhabdovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.331AlaAla: 3.331 ± 2.459
0.555AlaCys: 0.555 ± 0.29
3.609AlaAsp: 3.609 ± 1.254
3.609AlaGlu: 3.609 ± 0.49
1.943AlaPhe: 1.943 ± 1.065
2.499AlaGly: 2.499 ± 1.278
1.388AlaHis: 1.388 ± 0.484
3.331AlaIle: 3.331 ± 2.381
3.054AlaLys: 3.054 ± 1.76
4.164AlaLeu: 4.164 ± 0.546
1.388AlaMet: 1.388 ± 0.861
2.221AlaAsn: 2.221 ± 0.548
1.943AlaPro: 1.943 ± 1.459
1.388AlaGln: 1.388 ± 0.547
3.887AlaArg: 3.887 ± 0.583
2.221AlaSer: 2.221 ± 0.914
3.331AlaThr: 3.331 ± 0.865
4.164AlaVal: 4.164 ± 1.059
0.555AlaTrp: 0.555 ± 0.519
2.221AlaTyr: 2.221 ± 0.287
0.0AlaXaa: 0.0 ± 0.0
Cys
0.555CysAla: 0.555 ± 0.29
1.11CysCys: 1.11 ± 0.965
1.11CysAsp: 1.11 ± 0.46
0.0CysGlu: 0.0 ± 0.0
0.555CysPhe: 0.555 ± 0.29
2.221CysGly: 2.221 ± 0.625
0.0CysHis: 0.0 ± 0.0
1.11CysIle: 1.11 ± 0.307
0.555CysLys: 0.555 ± 0.304
2.221CysLeu: 2.221 ± 0.829
0.278CysMet: 0.278 ± 0.152
0.278CysAsn: 0.278 ± 0.524
0.833CysPro: 0.833 ± 0.622
0.555CysGln: 0.555 ± 0.73
0.555CysArg: 0.555 ± 0.29
1.666CysSer: 1.666 ± 1.384
1.666CysThr: 1.666 ± 0.983
0.555CysVal: 0.555 ± 0.29
0.555CysTrp: 0.555 ± 0.304
0.278CysTyr: 0.278 ± 0.348
0.0CysXaa: 0.0 ± 0.0
Asp
1.388AspAla: 1.388 ± 0.699
0.278AspCys: 0.278 ± 0.152
6.385AspAsp: 6.385 ± 2.112
4.442AspGlu: 4.442 ± 0.924
2.221AspPhe: 2.221 ± 0.716
3.054AspGly: 3.054 ± 1.474
1.388AspHis: 1.388 ± 0.501
6.108AspIle: 6.108 ± 0.97
3.887AspLys: 3.887 ± 1.479
6.663AspLeu: 6.663 ± 1.961
2.221AspMet: 2.221 ± 0.888
2.499AspAsn: 2.499 ± 0.521
5.552AspPro: 5.552 ± 0.717
1.943AspGln: 1.943 ± 0.424
4.164AspArg: 4.164 ± 0.88
3.054AspSer: 3.054 ± 1.904
2.776AspThr: 2.776 ± 0.832
3.054AspVal: 3.054 ± 0.45
0.278AspTrp: 0.278 ± 0.348
2.499AspTyr: 2.499 ± 1.349
0.0AspXaa: 0.0 ± 0.0
Glu
3.887GluAla: 3.887 ± 0.768
1.666GluCys: 1.666 ± 0.869
5.552GluAsp: 5.552 ± 0.937
3.609GluGlu: 3.609 ± 1.035
3.054GluPhe: 3.054 ± 0.97
5.275GluGly: 5.275 ± 1.069
1.943GluHis: 1.943 ± 1.232
3.887GluIle: 3.887 ± 0.583
3.054GluLys: 3.054 ± 1.332
4.997GluLeu: 4.997 ± 1.386
1.943GluMet: 1.943 ± 0.887
3.054GluAsn: 3.054 ± 0.317
0.555GluPro: 0.555 ± 0.304
2.221GluGln: 2.221 ± 0.881
3.887GluArg: 3.887 ± 0.583
3.609GluSer: 3.609 ± 0.882
2.499GluThr: 2.499 ± 0.616
6.108GluVal: 6.108 ± 0.986
1.388GluTrp: 1.388 ± 0.553
2.776GluTyr: 2.776 ± 0.578
0.0GluXaa: 0.0 ± 0.0
Phe
2.776PheAla: 2.776 ± 0.832
0.833PheCys: 0.833 ± 0.456
2.499PheAsp: 2.499 ± 0.764
2.776PheGlu: 2.776 ± 1.305
1.943PhePhe: 1.943 ± 0.524
3.054PheGly: 3.054 ± 0.852
0.833PheHis: 0.833 ± 0.398
1.388PheIle: 1.388 ± 0.761
1.11PheLys: 1.11 ± 0.381
5.552PheLeu: 5.552 ± 2.091
1.388PheMet: 1.388 ± 0.631
1.943PheAsn: 1.943 ± 0.771
2.776PhePro: 2.776 ± 1.031
1.666PheGln: 1.666 ± 0.792
3.054PheArg: 3.054 ± 0.802
1.11PheSer: 1.11 ± 0.381
2.221PheThr: 2.221 ± 0.513
2.499PheVal: 2.499 ± 0.684
0.0PheTrp: 0.0 ± 0.0
2.499PheTyr: 2.499 ± 0.791
0.0PheXaa: 0.0 ± 0.0
Gly
4.72GlyAla: 4.72 ± 0.609
0.833GlyCys: 0.833 ± 0.738
3.609GlyAsp: 3.609 ± 0.941
1.943GlyGlu: 1.943 ± 0.617
3.609GlyPhe: 3.609 ± 1.283
2.776GlyGly: 2.776 ± 0.471
2.499GlyHis: 2.499 ± 1.195
4.164GlyIle: 4.164 ± 0.753
4.164GlyLys: 4.164 ± 1.508
7.218GlyLeu: 7.218 ± 1.499
0.833GlyMet: 0.833 ± 0.938
1.666GlyAsn: 1.666 ± 1.424
1.666GlyPro: 1.666 ± 0.913
2.499GlyGln: 2.499 ± 0.584
3.331GlyArg: 3.331 ± 0.615
2.776GlySer: 2.776 ± 1.206
3.054GlyThr: 3.054 ± 0.759
3.887GlyVal: 3.887 ± 1.048
0.555GlyTrp: 0.555 ± 0.304
2.499GlyTyr: 2.499 ± 1.168
0.0GlyXaa: 0.0 ± 0.0
His
2.221HisAla: 2.221 ± 1.201
0.278HisCys: 0.278 ± 0.152
1.388HisAsp: 1.388 ± 0.277
1.388HisGlu: 1.388 ± 0.572
1.666HisPhe: 1.666 ± 0.643
0.555HisGly: 0.555 ± 0.328
0.833HisHis: 0.833 ± 0.398
1.943HisIle: 1.943 ± 0.539
1.11HisLys: 1.11 ± 0.457
2.221HisLeu: 2.221 ± 0.482
0.833HisMet: 0.833 ± 1.052
1.388HisAsn: 1.388 ± 0.277
1.388HisPro: 1.388 ± 0.277
1.943HisGln: 1.943 ± 0.815
1.388HisArg: 1.388 ± 0.436
1.666HisSer: 1.666 ± 0.611
0.833HisThr: 0.833 ± 0.321
1.943HisVal: 1.943 ± 0.576
0.555HisTrp: 0.555 ± 0.29
0.555HisTyr: 0.555 ± 0.304
0.0HisXaa: 0.0 ± 0.0
Ile
3.609IleAla: 3.609 ± 0.989
1.943IleCys: 1.943 ± 0.582
4.442IleAsp: 4.442 ± 2.408
5.83IleGlu: 5.83 ± 1.301
1.666IlePhe: 1.666 ± 0.632
2.499IleGly: 2.499 ± 0.565
1.388IleHis: 1.388 ± 0.484
2.499IleIle: 2.499 ± 0.85
4.72IleLys: 4.72 ± 0.917
4.164IleLeu: 4.164 ± 1.175
0.833IleMet: 0.833 ± 0.45
3.609IleAsn: 3.609 ± 1.134
5.552IlePro: 5.552 ± 1.364
0.555IleGln: 0.555 ± 0.304
3.887IleArg: 3.887 ± 1.129
3.054IleSer: 3.054 ± 0.774
4.72IleThr: 4.72 ± 1.041
1.943IleVal: 1.943 ± 0.612
1.943IleTrp: 1.943 ± 0.513
3.609IleTyr: 3.609 ± 1.252
0.0IleXaa: 0.0 ± 0.0
Lys
3.331LysAla: 3.331 ± 1.589
0.555LysCys: 0.555 ± 0.29
3.887LysAsp: 3.887 ± 1.032
3.054LysGlu: 3.054 ± 0.785
1.666LysPhe: 1.666 ± 0.444
4.164LysGly: 4.164 ± 1.494
1.388LysHis: 1.388 ± 0.421
4.72LysIle: 4.72 ± 1.785
5.552LysLys: 5.552 ± 1.777
6.108LysLeu: 6.108 ± 1.269
1.388LysMet: 1.388 ± 0.436
2.221LysAsn: 2.221 ± 0.734
1.388LysPro: 1.388 ± 0.641
1.11LysGln: 1.11 ± 0.608
3.331LysArg: 3.331 ± 0.397
2.776LysSer: 2.776 ± 0.95
2.499LysThr: 2.499 ± 1.081
6.663LysVal: 6.663 ± 1.452
0.833LysTrp: 0.833 ± 0.413
1.11LysTyr: 1.11 ± 0.56
0.0LysXaa: 0.0 ± 0.0
Leu
3.609LeuAla: 3.609 ± 1.0
1.388LeuCys: 1.388 ± 0.864
5.552LeuAsp: 5.552 ± 0.717
8.051LeuGlu: 8.051 ± 1.678
2.499LeuPhe: 2.499 ± 0.542
6.385LeuGly: 6.385 ± 1.199
3.054LeuHis: 3.054 ± 0.943
5.552LeuIle: 5.552 ± 1.665
8.051LeuLys: 8.051 ± 2.214
9.994LeuLeu: 9.994 ± 1.959
2.776LeuMet: 2.776 ± 0.967
3.609LeuAsn: 3.609 ± 0.599
3.054LeuPro: 3.054 ± 1.091
2.221LeuGln: 2.221 ± 0.65
7.773LeuArg: 7.773 ± 2.082
9.162LeuSer: 9.162 ± 1.707
5.83LeuThr: 5.83 ± 1.228
3.887LeuVal: 3.887 ± 1.276
1.11LeuTrp: 1.11 ± 0.58
4.164LeuTyr: 4.164 ± 1.596
0.0LeuXaa: 0.0 ± 0.0
Met
0.555MetAla: 0.555 ± 0.328
0.555MetCys: 0.555 ± 0.519
1.666MetAsp: 1.666 ± 1.391
1.666MetGlu: 1.666 ± 0.959
1.11MetPhe: 1.11 ± 0.307
1.388MetGly: 1.388 ± 0.727
0.278MetHis: 0.278 ± 0.152
1.388MetIle: 1.388 ± 0.857
1.388MetLys: 1.388 ± 0.421
2.221MetLeu: 2.221 ± 0.772
0.278MetMet: 0.278 ± 0.348
1.11MetAsn: 1.11 ± 0.801
0.833MetPro: 0.833 ± 0.321
0.555MetGln: 0.555 ± 0.328
1.666MetArg: 1.666 ± 0.851
2.221MetSer: 2.221 ± 0.592
2.499MetThr: 2.499 ± 0.726
2.499MetVal: 2.499 ± 0.355
0.278MetTrp: 0.278 ± 0.152
1.11MetTyr: 1.11 ± 0.608
0.0MetXaa: 0.0 ± 0.0
Asn
2.776AsnAla: 2.776 ± 0.782
0.555AsnCys: 0.555 ± 0.304
2.221AsnAsp: 2.221 ± 0.482
3.887AsnGlu: 3.887 ± 1.027
1.943AsnPhe: 1.943 ± 0.783
1.666AsnGly: 1.666 ± 1.108
0.833AsnHis: 0.833 ± 0.321
2.776AsnIle: 2.776 ± 0.421
1.11AsnLys: 1.11 ± 0.386
5.83AsnLeu: 5.83 ± 1.414
1.11AsnMet: 1.11 ± 0.404
2.221AsnAsn: 2.221 ± 0.914
2.776AsnPro: 2.776 ± 0.68
1.943AsnGln: 1.943 ± 0.832
1.388AsnArg: 1.388 ± 0.399
2.776AsnSer: 2.776 ± 1.171
1.943AsnThr: 1.943 ± 0.783
1.943AsnVal: 1.943 ± 1.141
1.666AsnTrp: 1.666 ± 0.632
1.943AsnTyr: 1.943 ± 0.771
0.0AsnXaa: 0.0 ± 0.0
Pro
2.776ProAla: 2.776 ± 1.189
0.278ProCys: 0.278 ± 0.152
2.776ProAsp: 2.776 ± 0.876
3.054ProGlu: 3.054 ± 1.175
1.11ProPhe: 1.11 ± 0.452
2.221ProGly: 2.221 ± 0.772
0.555ProHis: 0.555 ± 0.304
3.054ProIle: 3.054 ± 0.657
1.943ProLys: 1.943 ± 1.595
6.108ProLeu: 6.108 ± 1.182
0.0ProMet: 0.0 ± 0.0
2.221ProAsn: 2.221 ± 0.548
3.054ProPro: 3.054 ± 2.204
0.833ProGln: 0.833 ± 0.52
2.499ProArg: 2.499 ± 0.871
3.609ProSer: 3.609 ± 2.29
3.054ProThr: 3.054 ± 0.746
4.442ProVal: 4.442 ± 0.965
1.11ProTrp: 1.11 ± 0.386
2.776ProTyr: 2.776 ± 0.777
0.0ProXaa: 0.0 ± 0.0
Gln
1.666GlnAla: 1.666 ± 1.407
0.555GlnCys: 0.555 ± 0.29
2.221GlnAsp: 2.221 ± 0.743
1.943GlnGlu: 1.943 ± 0.68
2.499GlnPhe: 2.499 ± 0.931
1.666GlnGly: 1.666 ± 0.607
1.11GlnHis: 1.11 ± 0.307
1.943GlnIle: 1.943 ± 0.424
0.555GlnLys: 0.555 ± 0.464
3.331GlnLeu: 3.331 ± 1.135
0.555GlnMet: 0.555 ± 0.311
1.666GlnAsn: 1.666 ± 0.735
1.11GlnPro: 1.11 ± 0.381
0.555GlnGln: 0.555 ± 0.304
2.221GlnArg: 2.221 ± 0.656
0.833GlnSer: 0.833 ± 0.456
2.221GlnThr: 2.221 ± 0.482
1.388GlnVal: 1.388 ± 1.12
0.833GlnTrp: 0.833 ± 0.321
1.666GlnTyr: 1.666 ± 1.148
0.0GlnXaa: 0.0 ± 0.0
Arg
3.054ArgAla: 3.054 ± 1.002
1.666ArgCys: 1.666 ± 0.454
2.776ArgAsp: 2.776 ± 0.3
5.83ArgGlu: 5.83 ± 1.189
4.164ArgPhe: 4.164 ± 1.2
2.499ArgGly: 2.499 ± 0.703
1.11ArgHis: 1.11 ± 0.608
3.054ArgIle: 3.054 ± 0.426
2.776ArgLys: 2.776 ± 0.789
6.941ArgLeu: 6.941 ± 1.318
1.666ArgMet: 1.666 ± 1.032
3.054ArgAsn: 3.054 ± 0.827
1.943ArgPro: 1.943 ± 0.513
2.221ArgGln: 2.221 ± 1.016
3.887ArgArg: 3.887 ± 0.216
2.776ArgSer: 2.776 ± 0.95
5.275ArgThr: 5.275 ± 1.094
4.72ArgVal: 4.72 ± 1.179
1.666ArgTrp: 1.666 ± 0.913
2.221ArgTyr: 2.221 ± 0.38
0.0ArgXaa: 0.0 ± 0.0
Ser
2.776SerAla: 2.776 ± 0.795
0.555SerCys: 0.555 ± 0.419
2.776SerAsp: 2.776 ± 1.269
4.164SerGlu: 4.164 ± 0.449
1.943SerPhe: 1.943 ± 0.771
5.275SerGly: 5.275 ± 1.356
1.11SerHis: 1.11 ± 0.942
4.442SerIle: 4.442 ± 0.954
3.609SerLys: 3.609 ± 0.927
6.108SerLeu: 6.108 ± 1.209
1.388SerMet: 1.388 ± 0.861
2.499SerAsn: 2.499 ± 0.881
2.776SerPro: 2.776 ± 0.554
1.11SerGln: 1.11 ± 0.485
4.997SerArg: 4.997 ± 0.732
4.72SerSer: 4.72 ± 1.082
3.887SerThr: 3.887 ± 1.455
3.887SerVal: 3.887 ± 0.668
1.666SerTrp: 1.666 ± 0.664
3.054SerTyr: 3.054 ± 1.942
0.0SerXaa: 0.0 ± 0.0
Thr
2.221ThrAla: 2.221 ± 0.615
0.0ThrCys: 0.0 ± 0.0
3.331ThrAsp: 3.331 ± 0.739
4.164ThrGlu: 4.164 ± 1.017
1.943ThrPhe: 1.943 ± 1.668
4.72ThrGly: 4.72 ± 0.981
1.943ThrHis: 1.943 ± 0.424
3.331ThrIle: 3.331 ± 1.03
3.054ThrLys: 3.054 ± 0.45
5.552ThrLeu: 5.552 ± 0.309
1.943ThrMet: 1.943 ± 0.741
3.054ThrAsn: 3.054 ± 1.062
3.609ThrPro: 3.609 ± 2.427
2.499ThrGln: 2.499 ± 0.76
4.164ThrArg: 4.164 ± 0.944
4.72ThrSer: 4.72 ± 0.757
4.72ThrThr: 4.72 ± 0.636
3.887ThrVal: 3.887 ± 1.293
1.666ThrTrp: 1.666 ± 0.664
1.943ThrTyr: 1.943 ± 0.424
0.0ThrXaa: 0.0 ± 0.0
Val
3.887ValAla: 3.887 ± 1.629
2.221ValCys: 2.221 ± 0.572
3.609ValAsp: 3.609 ± 2.148
2.221ValGlu: 2.221 ± 0.877
3.054ValPhe: 3.054 ± 1.297
2.776ValGly: 2.776 ± 0.554
1.666ValHis: 1.666 ± 0.797
5.552ValIle: 5.552 ± 1.02
3.054ValLys: 3.054 ± 1.463
4.442ValLeu: 4.442 ± 1.323
1.666ValMet: 1.666 ± 0.444
1.11ValAsn: 1.11 ± 0.386
3.609ValPro: 3.609 ± 0.882
1.943ValGln: 1.943 ± 0.58
2.499ValArg: 2.499 ± 0.7
5.83ValSer: 5.83 ± 1.124
4.997ValThr: 4.997 ± 1.13
3.609ValVal: 3.609 ± 1.0
1.388ValTrp: 1.388 ± 0.484
3.609ValTyr: 3.609 ± 0.38
0.0ValXaa: 0.0 ± 0.0
Trp
0.278TrpAla: 0.278 ± 0.152
0.0TrpCys: 0.0 ± 0.0
1.666TrpAsp: 1.666 ± 0.632
2.221TrpGlu: 2.221 ± 0.914
1.11TrpPhe: 1.11 ± 0.608
1.666TrpGly: 1.666 ± 0.324
0.833TrpHis: 0.833 ± 0.622
0.833TrpIle: 0.833 ± 0.456
0.833TrpLys: 0.833 ± 0.321
0.833TrpLeu: 0.833 ± 0.526
0.833TrpMet: 0.833 ± 0.554
1.388TrpAsn: 1.388 ± 0.561
0.833TrpPro: 0.833 ± 0.321
0.0TrpGln: 0.0 ± 0.0
1.943TrpArg: 1.943 ± 0.771
0.833TrpSer: 0.833 ± 0.45
1.11TrpThr: 1.11 ± 0.56
1.11TrpVal: 1.11 ± 0.58
0.555TrpTrp: 0.555 ± 0.29
0.833TrpTyr: 0.833 ± 0.413
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.388TyrAla: 1.388 ± 0.277
0.833TyrCys: 0.833 ± 0.523
2.776TyrAsp: 2.776 ± 0.596
1.11TyrGlu: 1.11 ± 0.457
2.221TyrPhe: 2.221 ± 1.324
1.943TyrGly: 1.943 ± 0.783
1.943TyrHis: 1.943 ± 0.86
1.388TyrIle: 1.388 ± 0.872
4.164TyrLys: 4.164 ± 1.246
3.054TyrLeu: 3.054 ± 0.85
1.666TyrMet: 1.666 ± 0.623
2.499TyrAsn: 2.499 ± 1.369
2.221TyrPro: 2.221 ± 0.943
2.776TyrGln: 2.776 ± 0.666
2.776TyrArg: 2.776 ± 1.403
3.331TyrSer: 3.331 ± 0.76
3.331TyrThr: 3.331 ± 0.523
0.555TyrVal: 0.555 ± 0.304
1.11TyrTrp: 1.11 ± 0.58
0.833TyrTyr: 0.833 ± 0.413
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (3603 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski