Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_115

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.352AlaAla: 2.352 ± 1.817
0.588AlaCys: 0.588 ± 0.945
0.588AlaAsp: 0.588 ± 0.945
4.115AlaGlu: 4.115 ± 2.067
4.115AlaPhe: 4.115 ± 0.973
1.764AlaGly: 1.764 ± 0.378
1.764AlaHis: 1.764 ± 0.728
6.467AlaIle: 6.467 ± 2.783
5.291AlaLys: 5.291 ± 1.678
4.703AlaLeu: 4.703 ± 1.546
1.176AlaMet: 1.176 ± 0.441
6.467AlaAsn: 6.467 ± 2.42
0.0AlaPro: 0.0 ± 0.0
5.291AlaGln: 5.291 ± 2.058
4.115AlaArg: 4.115 ± 1.716
7.643AlaSer: 7.643 ± 1.099
1.764AlaThr: 1.764 ± 0.378
3.527AlaVal: 3.527 ± 1.139
0.0AlaTrp: 0.0 ± 0.0
2.939AlaTyr: 2.939 ± 0.952
0.0AlaXaa: 0.0 ± 0.0
Cys
1.176CysAla: 1.176 ± 0.516
0.0CysCys: 0.0 ± 0.0
1.176CysAsp: 1.176 ± 1.336
0.0CysGlu: 0.0 ± 0.0
1.176CysPhe: 1.176 ± 0.847
0.588CysGly: 0.588 ± 0.579
0.0CysHis: 0.0 ± 0.0
0.588CysIle: 0.588 ± 0.834
1.176CysLys: 1.176 ± 0.516
1.176CysLeu: 1.176 ± 1.006
0.0CysMet: 0.0 ± 0.0
0.588CysAsn: 0.588 ± 0.579
1.176CysPro: 1.176 ± 0.847
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
2.352CysSer: 2.352 ± 1.222
0.588CysThr: 0.588 ± 0.579
0.588CysVal: 0.588 ± 0.834
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.115AspAla: 4.115 ± 1.095
1.176AspCys: 1.176 ± 1.123
6.467AspAsp: 6.467 ± 1.553
1.176AspGlu: 1.176 ± 0.441
5.879AspPhe: 5.879 ± 1.055
3.527AspGly: 3.527 ± 1.136
0.588AspHis: 0.588 ± 0.579
7.643AspIle: 7.643 ± 1.165
2.939AspLys: 2.939 ± 1.055
1.764AspLeu: 1.764 ± 0.793
1.176AspMet: 1.176 ± 0.441
2.939AspAsn: 2.939 ± 0.584
0.588AspPro: 0.588 ± 0.417
2.352AspGln: 2.352 ± 1.215
0.588AspArg: 0.588 ± 0.454
8.818AspSer: 8.818 ± 1.941
2.352AspThr: 2.352 ± 1.102
4.703AspVal: 4.703 ± 0.969
0.0AspTrp: 0.0 ± 0.0
2.939AspTyr: 2.939 ± 1.13
0.0AspXaa: 0.0 ± 0.0
Glu
2.939GluAla: 2.939 ± 1.116
0.588GluCys: 0.588 ± 0.417
1.764GluAsp: 1.764 ± 0.965
0.588GluGlu: 0.588 ± 0.945
2.352GluPhe: 2.352 ± 1.77
1.176GluGly: 1.176 ± 0.833
1.764GluHis: 1.764 ± 0.843
4.115GluIle: 4.115 ± 1.508
4.115GluLys: 4.115 ± 1.376
1.764GluLeu: 1.764 ± 0.797
1.176GluMet: 1.176 ± 0.737
0.588GluAsn: 0.588 ± 0.417
1.176GluPro: 1.176 ± 0.833
1.176GluGln: 1.176 ± 1.078
1.176GluArg: 1.176 ± 0.909
2.939GluSer: 2.939 ± 0.968
1.176GluThr: 1.176 ± 0.833
1.176GluVal: 1.176 ± 0.63
1.176GluTrp: 1.176 ± 0.928
7.055GluTyr: 7.055 ± 1.573
0.0GluXaa: 0.0 ± 0.0
Phe
4.115PheAla: 4.115 ± 0.783
1.176PheCys: 1.176 ± 0.516
3.527PheAsp: 3.527 ± 0.915
2.939PheGlu: 2.939 ± 1.276
3.527PhePhe: 3.527 ± 0.9
2.939PheGly: 2.939 ± 2.083
1.764PheHis: 1.764 ± 1.23
1.176PheIle: 1.176 ± 0.87
2.352PheLys: 2.352 ± 1.261
7.055PheLeu: 7.055 ± 1.552
2.939PheMet: 2.939 ± 0.884
7.055PheAsn: 7.055 ± 0.675
0.588PhePro: 0.588 ± 0.417
3.527PheGln: 3.527 ± 1.861
2.939PheArg: 2.939 ± 1.2
7.055PheSer: 7.055 ± 3.59
3.527PheThr: 3.527 ± 1.329
2.352PheVal: 2.352 ± 0.734
0.0PheTrp: 0.0 ± 0.0
5.291PheTyr: 5.291 ± 1.064
0.0PheXaa: 0.0 ± 0.0
Gly
1.176GlyAla: 1.176 ± 0.909
0.0GlyCys: 0.0 ± 0.0
2.352GlyAsp: 2.352 ± 0.883
1.764GlyGlu: 1.764 ± 1.25
2.939GlyPhe: 2.939 ± 0.584
1.176GlyGly: 1.176 ± 0.87
1.764GlyHis: 1.764 ± 1.736
4.703GlyIle: 4.703 ± 1.766
1.764GlyLys: 1.764 ± 1.405
3.527GlyLeu: 3.527 ± 1.308
0.588GlyMet: 0.588 ± 0.834
2.939GlyAsn: 2.939 ± 0.823
2.939GlyPro: 2.939 ± 1.158
1.764GlyGln: 1.764 ± 1.358
0.588GlyArg: 0.588 ± 0.417
7.055GlySer: 7.055 ± 1.31
1.764GlyThr: 1.764 ± 0.965
1.176GlyVal: 1.176 ± 0.995
0.588GlyTrp: 0.588 ± 0.454
3.527GlyTyr: 3.527 ± 0.796
0.0GlyXaa: 0.0 ± 0.0
His
1.764HisAla: 1.764 ± 1.043
0.0HisCys: 0.0 ± 0.0
0.588HisAsp: 0.588 ± 0.579
0.0HisGlu: 0.0 ± 0.0
1.176HisPhe: 1.176 ± 0.833
0.588HisGly: 0.588 ± 0.417
0.588HisHis: 0.588 ± 0.454
1.176HisIle: 1.176 ± 0.63
0.588HisLys: 0.588 ± 0.454
0.588HisLeu: 0.588 ± 0.849
0.0HisMet: 0.0 ± 0.0
1.176HisAsn: 1.176 ± 1.158
0.0HisPro: 0.0 ± 0.0
0.588HisGln: 0.588 ± 0.454
0.588HisArg: 0.588 ± 0.579
1.764HisSer: 1.764 ± 1.478
0.0HisThr: 0.0 ± 0.0
1.764HisVal: 1.764 ± 0.738
0.588HisTrp: 0.588 ± 0.579
1.764HisTyr: 1.764 ± 0.738
0.0HisXaa: 0.0 ± 0.0
Ile
6.467IleAla: 6.467 ± 2.527
0.0IleCys: 0.0 ± 0.0
4.115IleAsp: 4.115 ± 1.554
1.764IleGlu: 1.764 ± 0.898
3.527IlePhe: 3.527 ± 1.576
2.352IleGly: 2.352 ± 1.586
0.588IleHis: 0.588 ± 0.417
2.939IleIle: 2.939 ± 0.823
1.764IleLys: 1.764 ± 1.399
5.879IleLeu: 5.879 ± 1.524
0.0IleMet: 0.0 ± 0.0
8.23IleAsn: 8.23 ± 2.904
2.939IlePro: 2.939 ± 1.498
2.939IleGln: 2.939 ± 0.823
3.527IleArg: 3.527 ± 1.269
7.055IleSer: 7.055 ± 1.601
2.352IleThr: 2.352 ± 1.102
1.764IleVal: 1.764 ± 0.793
0.0IleTrp: 0.0 ± 0.0
3.527IleTyr: 3.527 ± 1.199
0.0IleXaa: 0.0 ± 0.0
Lys
3.527LysAla: 3.527 ± 2.099
1.764LysCys: 1.764 ± 1.736
2.939LysAsp: 2.939 ± 1.066
0.588LysGlu: 0.588 ± 0.945
2.352LysPhe: 2.352 ± 0.939
1.176LysGly: 1.176 ± 0.63
0.0LysHis: 0.0 ± 0.0
2.352LysIle: 2.352 ± 0.844
3.527LysLys: 3.527 ± 1.521
5.879LysLeu: 5.879 ± 0.761
0.0LysMet: 0.0 ± 0.0
4.703LysAsn: 4.703 ± 2.4
2.939LysPro: 2.939 ± 1.707
2.352LysGln: 2.352 ± 1.203
2.352LysArg: 2.352 ± 0.873
4.115LysSer: 4.115 ± 1.297
2.352LysThr: 2.352 ± 1.179
4.703LysVal: 4.703 ± 2.055
1.176LysTrp: 1.176 ± 1.158
5.879LysTyr: 5.879 ± 1.701
0.0LysXaa: 0.0 ± 0.0
Leu
2.352LeuAla: 2.352 ± 1.667
0.588LeuCys: 0.588 ± 0.834
7.055LeuAsp: 7.055 ± 1.63
4.703LeuGlu: 4.703 ± 1.871
10.582LeuPhe: 10.582 ± 1.868
5.291LeuGly: 5.291 ± 1.334
0.588LeuHis: 0.588 ± 0.417
7.055LeuIle: 7.055 ± 1.998
4.115LeuLys: 4.115 ± 1.297
7.055LeuLeu: 7.055 ± 1.189
1.176LeuMet: 1.176 ± 0.495
5.291LeuAsn: 5.291 ± 1.766
6.467LeuPro: 6.467 ± 1.846
4.115LeuGln: 4.115 ± 1.095
3.527LeuArg: 3.527 ± 0.909
10.582LeuSer: 10.582 ± 2.662
4.703LeuThr: 4.703 ± 1.499
1.764LeuVal: 1.764 ± 1.132
1.176LeuTrp: 1.176 ± 0.441
3.527LeuTyr: 3.527 ± 0.772
0.0LeuXaa: 0.0 ± 0.0
Met
2.352MetAla: 2.352 ± 0.658
1.176MetCys: 1.176 ± 0.516
2.352MetAsp: 2.352 ± 0.883
1.176MetGlu: 1.176 ± 0.833
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
1.176MetIle: 1.176 ± 0.889
0.588MetLys: 0.588 ± 0.834
2.939MetLeu: 2.939 ± 1.198
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.176MetPro: 1.176 ± 0.441
0.0MetGln: 0.0 ± 0.0
0.0MetArg: 0.0 ± 0.0
1.176MetSer: 1.176 ± 0.833
1.764MetThr: 1.764 ± 0.935
1.764MetVal: 1.764 ± 1.122
0.0MetTrp: 0.0 ± 0.0
0.588MetTyr: 0.588 ± 0.834
0.0MetXaa: 0.0 ± 0.0
Asn
5.291AsnAla: 5.291 ± 2.866
0.0AsnCys: 0.0 ± 0.0
4.703AsnAsp: 4.703 ± 0.972
4.115AsnGlu: 4.115 ± 1.647
2.939AsnPhe: 2.939 ± 1.203
6.467AsnGly: 6.467 ± 1.169
0.588AsnHis: 0.588 ± 0.417
2.939AsnIle: 2.939 ± 1.718
4.115AsnLys: 4.115 ± 1.213
8.23AsnLeu: 8.23 ± 1.451
1.764AsnMet: 1.764 ± 1.022
5.879AsnAsn: 5.879 ± 2.233
10.582AsnPro: 10.582 ± 2.34
2.939AsnGln: 2.939 ± 1.066
3.527AsnArg: 3.527 ± 1.547
4.115AsnSer: 4.115 ± 1.905
2.939AsnThr: 2.939 ± 1.13
2.352AsnVal: 2.352 ± 0.913
1.176AsnTrp: 1.176 ± 0.516
4.115AsnTyr: 4.115 ± 1.159
0.0AsnXaa: 0.0 ± 0.0
Pro
2.352ProAla: 2.352 ± 0.883
0.588ProCys: 0.588 ± 0.579
2.352ProAsp: 2.352 ± 1.569
4.703ProGlu: 4.703 ± 1.718
2.352ProPhe: 2.352 ± 0.486
2.352ProGly: 2.352 ± 1.045
1.176ProHis: 1.176 ± 0.995
1.764ProIle: 1.764 ± 1.018
2.939ProLys: 2.939 ± 1.031
4.115ProLeu: 4.115 ± 1.834
0.588ProMet: 0.588 ± 0.417
3.527ProAsn: 3.527 ± 0.9
1.176ProPro: 1.176 ± 0.928
1.764ProGln: 1.764 ± 0.728
1.176ProArg: 1.176 ± 0.516
4.703ProSer: 4.703 ± 1.718
1.176ProThr: 1.176 ± 0.516
6.467ProVal: 6.467 ± 2.787
0.0ProTrp: 0.0 ± 0.0
2.352ProTyr: 2.352 ± 0.947
0.0ProXaa: 0.0 ± 0.0
Gln
4.115GlnAla: 4.115 ± 2.001
0.588GlnCys: 0.588 ± 0.417
2.939GlnAsp: 2.939 ± 1.13
1.176GlnGlu: 1.176 ± 0.833
1.764GlnPhe: 1.764 ± 0.793
2.939GlnGly: 2.939 ± 1.2
0.588GlnHis: 0.588 ± 0.579
2.352GlnIle: 2.352 ± 1.817
1.764GlnLys: 1.764 ± 0.378
2.939GlnLeu: 2.939 ± 1.241
1.176GlnMet: 1.176 ± 1.078
4.115GlnAsn: 4.115 ± 2.142
2.939GlnPro: 2.939 ± 1.602
2.352GlnGln: 2.352 ± 1.171
0.588GlnArg: 0.588 ± 0.417
4.703GlnSer: 4.703 ± 1.805
2.352GlnThr: 2.352 ± 1.215
2.352GlnVal: 2.352 ± 0.658
1.176GlnTrp: 1.176 ± 0.833
1.176GlnTyr: 1.176 ± 0.909
0.0GlnXaa: 0.0 ± 0.0
Arg
3.527ArgAla: 3.527 ± 1.752
0.0ArgCys: 0.0 ± 0.0
1.176ArgAsp: 1.176 ± 0.63
1.176ArgGlu: 1.176 ± 0.63
5.879ArgPhe: 5.879 ± 1.775
0.588ArgGly: 0.588 ± 0.417
0.588ArgHis: 0.588 ± 0.417
2.352ArgIle: 2.352 ± 1.234
2.939ArgLys: 2.939 ± 1.708
3.527ArgLeu: 3.527 ± 0.946
0.588ArgMet: 0.588 ± 0.417
3.527ArgAsn: 3.527 ± 1.217
3.527ArgPro: 3.527 ± 0.9
0.588ArgGln: 0.588 ± 0.454
1.764ArgArg: 1.764 ± 1.736
4.115ArgSer: 4.115 ± 0.973
0.0ArgThr: 0.0 ± 0.0
0.588ArgVal: 0.588 ± 0.417
0.588ArgTrp: 0.588 ± 0.834
3.527ArgTyr: 3.527 ± 1.481
0.0ArgXaa: 0.0 ± 0.0
Ser
6.467SerAla: 6.467 ± 1.553
1.764SerCys: 1.764 ± 1.23
7.643SerAsp: 7.643 ± 1.294
3.527SerGlu: 3.527 ± 0.818
6.467SerPhe: 6.467 ± 2.288
3.527SerGly: 3.527 ± 0.796
0.0SerHis: 0.0 ± 0.0
4.703SerIle: 4.703 ± 1.139
7.643SerLys: 7.643 ± 2.291
17.049SerLeu: 17.049 ± 3.203
1.176SerMet: 1.176 ± 0.833
4.703SerAsn: 4.703 ± 2.047
5.291SerPro: 5.291 ± 1.135
6.467SerGln: 6.467 ± 1.077
4.115SerArg: 4.115 ± 2.166
8.818SerSer: 8.818 ± 2.286
3.527SerThr: 3.527 ± 1.291
4.115SerVal: 4.115 ± 1.674
0.588SerTrp: 0.588 ± 0.417
3.527SerTyr: 3.527 ± 1.295
0.0SerXaa: 0.0 ± 0.0
Thr
4.115ThrAla: 4.115 ± 0.959
0.588ThrCys: 0.588 ± 0.417
0.588ThrAsp: 0.588 ± 0.454
3.527ThrGlu: 3.527 ± 1.917
4.115ThrPhe: 4.115 ± 2.265
1.176ThrGly: 1.176 ± 0.909
0.0ThrHis: 0.0 ± 0.0
3.527ThrIle: 3.527 ± 0.675
2.939ThrLys: 2.939 ± 0.584
2.939ThrLeu: 2.939 ± 1.055
0.0ThrMet: 0.0 ± 0.0
5.879ThrAsn: 5.879 ± 2.256
0.0ThrPro: 0.0 ± 0.0
1.764ThrGln: 1.764 ± 0.728
2.352ThrArg: 2.352 ± 0.779
3.527ThrSer: 3.527 ± 1.903
1.176ThrThr: 1.176 ± 0.441
1.764ThrVal: 1.764 ± 1.006
0.0ThrTrp: 0.0 ± 0.0
1.176ThrTyr: 1.176 ± 1.158
0.0ThrXaa: 0.0 ± 0.0
Val
2.352ValAla: 2.352 ± 1.215
1.176ValCys: 1.176 ± 1.667
3.527ValAsp: 3.527 ± 0.818
0.588ValGlu: 0.588 ± 0.579
2.352ValPhe: 2.352 ± 1.726
2.939ValGly: 2.939 ± 1.2
1.176ValHis: 1.176 ± 0.909
2.352ValIle: 2.352 ± 0.973
0.588ValLys: 0.588 ± 0.579
4.115ValLeu: 4.115 ± 0.942
0.588ValMet: 0.588 ± 0.579
3.527ValAsn: 3.527 ± 1.441
2.939ValPro: 2.939 ± 1.174
2.352ValGln: 2.352 ± 0.883
2.939ValArg: 2.939 ± 2.014
7.643ValSer: 7.643 ± 1.399
2.352ValThr: 2.352 ± 0.883
1.764ValVal: 1.764 ± 0.793
0.0ValTrp: 0.0 ± 0.0
1.764ValTyr: 1.764 ± 0.738
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.176TrpAsp: 1.176 ± 0.909
0.588TrpGlu: 0.588 ± 0.417
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.588TrpHis: 0.588 ± 0.579
1.176TrpIle: 1.176 ± 0.833
0.588TrpLys: 0.588 ± 0.417
2.352TrpLeu: 2.352 ± 1.991
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.588TrpPro: 0.588 ± 0.579
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.588TrpSer: 0.588 ± 0.454
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.176TrpTyr: 1.176 ± 0.516
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.115TyrAla: 4.115 ± 0.832
0.588TyrCys: 0.588 ± 0.579
4.703TyrAsp: 4.703 ± 1.019
1.764TyrGlu: 1.764 ± 1.006
2.939TyrPhe: 2.939 ± 1.542
3.527TyrGly: 3.527 ± 1.211
1.176TyrHis: 1.176 ± 0.833
1.176TyrIle: 1.176 ± 0.833
2.939TyrLys: 2.939 ± 1.171
4.115TyrLeu: 4.115 ± 1.612
3.527TyrMet: 3.527 ± 0.8
7.643TyrAsn: 7.643 ± 1.944
0.588TyrPro: 0.588 ± 0.579
1.764TyrGln: 1.764 ± 0.935
4.703TyrArg: 4.703 ± 1.709
2.352TyrSer: 2.352 ± 0.913
5.291TyrThr: 5.291 ± 1.462
2.352TyrVal: 2.352 ± 1.506
0.588TyrTrp: 0.588 ± 0.579
4.703TyrTyr: 4.703 ± 1.311
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1702 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski