Labrenzia suaedae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Stappiaceae; Labrenzia

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6YXA1|A0A1M6YXA1_9RHOB Putative peptidoglycan binding domain-containing protein OS=Labrenzia suaedae OX=735517 GN=SAMN05444272_0062 PE=4 SV=1
MM1 pKa = 7.24VKK3 pKa = 10.67NSIDD7 pKa = 3.04WGTQVAASGGVINVYY22 pKa = 9.57FAEE25 pKa = 4.34SGEE28 pKa = 4.26VFDD31 pKa = 5.43GQTSQGWSSYY41 pKa = 10.25EE42 pKa = 3.53IQQAMLAFSSYY53 pKa = 11.7SNFLNITFNRR63 pKa = 11.84VYY65 pKa = 10.42SSSEE69 pKa = 3.51ATFNLVATSSSSIGGNLGYY88 pKa = 9.59MNPPGTSGAGIGVFATDD105 pKa = 3.35GTGWNTYY112 pKa = 10.0GGLEE116 pKa = 4.06VGGYY120 pKa = 10.66GYY122 pKa = 8.44ITLIHH127 pKa = 6.32EE128 pKa = 5.34FGHH131 pKa = 6.28GMGLAHH137 pKa = 6.82PHH139 pKa = 6.08DD140 pKa = 4.49TGGSSSIMSGVTASFGDD157 pKa = 3.83YY158 pKa = 11.28GDD160 pKa = 4.8FDD162 pKa = 5.68LNQGVYY168 pKa = 8.92TAMSYY173 pKa = 11.16NDD175 pKa = 3.29GWQTAPHH182 pKa = 6.44GASPSYY188 pKa = 10.69SYY190 pKa = 10.99GYY192 pKa = 9.27EE193 pKa = 3.99GTMMALDD200 pKa = 3.46IAVLQDD206 pKa = 3.2KK207 pKa = 10.72YY208 pKa = 11.42GANTTFASGNNTYY221 pKa = 10.66VLPGSNGVGTYY232 pKa = 10.22YY233 pKa = 10.95SSIWDD238 pKa = 3.32TGGNDD243 pKa = 3.51EE244 pKa = 4.74ISYY247 pKa = 9.48TGSLDD252 pKa = 3.25VTIDD256 pKa = 3.84LRR258 pKa = 11.84PATLNYY264 pKa = 9.88EE265 pKa = 4.13VGGGGFISYY274 pKa = 10.88ASGIHH279 pKa = 5.91GGYY282 pKa = 8.98TIAQGVVIEE291 pKa = 4.69FATSGSGNDD300 pKa = 3.6TLVGNAANNVLRR312 pKa = 11.84GNGGNDD318 pKa = 2.98TLTGNRR324 pKa = 11.84GNDD327 pKa = 3.44KK328 pKa = 10.47IYY330 pKa = 10.82GGTGSDD336 pKa = 3.4VAVYY340 pKa = 10.33NYY342 pKa = 10.45NSSEE346 pKa = 3.89YY347 pKa = 10.25TITHH351 pKa = 6.64NDD353 pKa = 3.64DD354 pKa = 3.26GSITIAHH361 pKa = 6.3TGGTRR366 pKa = 11.84LDD368 pKa = 4.25GVDD371 pKa = 3.11TLYY374 pKa = 11.04DD375 pKa = 3.36VEE377 pKa = 4.36AAQFADD383 pKa = 3.56EE384 pKa = 5.69RR385 pKa = 11.84IVLDD389 pKa = 4.29KK390 pKa = 10.82LTGPLDD396 pKa = 3.69VVFLQDD402 pKa = 3.43LTGSFDD408 pKa = 4.43DD409 pKa = 5.35DD410 pKa = 4.06LPYY413 pKa = 9.87MQNSVDD419 pKa = 5.29DD420 pKa = 3.74IAEE423 pKa = 4.34SIEE426 pKa = 3.98LSFSGSRR433 pKa = 11.84FAVTSFKK440 pKa = 10.74DD441 pKa = 2.93IYY443 pKa = 11.12DD444 pKa = 3.81EE445 pKa = 3.77YY446 pKa = 10.56TYY448 pKa = 11.29AVEE451 pKa = 5.27ANFTTSTASLSSTYY465 pKa = 10.93AGLSASGGGDD475 pKa = 3.09SAEE478 pKa = 4.24AQLTALLSAANDD490 pKa = 3.55TTLSYY495 pKa = 10.59RR496 pKa = 11.84VGVSRR501 pKa = 11.84VFVLATDD508 pKa = 4.41ASFHH512 pKa = 6.6SYY514 pKa = 10.67EE515 pKa = 4.41SIEE518 pKa = 4.28TIAATFAEE526 pKa = 4.71KK527 pKa = 10.55DD528 pKa = 3.53IIPIFAVTSSQVGTYY543 pKa = 9.78QGLVDD548 pKa = 4.25QIGAGIVVTIQYY560 pKa = 10.18DD561 pKa = 3.44SSDD564 pKa = 3.57FADD567 pKa = 4.01SIRR570 pKa = 11.84YY571 pKa = 8.42GLAEE575 pKa = 4.19LSGEE579 pKa = 4.22VTEE582 pKa = 6.03LGTSSNDD589 pKa = 2.65ILTGKK594 pKa = 10.09EE595 pKa = 4.0GFSDD599 pKa = 4.61YY600 pKa = 10.94IFGMAGDD607 pKa = 3.87DD608 pKa = 4.13SIRR611 pKa = 11.84GLGGNDD617 pKa = 3.4KK618 pKa = 11.04LDD620 pKa = 4.06GGSGDD625 pKa = 5.09DD626 pKa = 5.02DD627 pKa = 5.22LSGDD631 pKa = 3.95SGDD634 pKa = 3.74DD635 pKa = 3.54TVIGGSGKK643 pKa = 10.18DD644 pKa = 3.38VLRR647 pKa = 11.84GGTGSDD653 pKa = 4.69KK654 pKa = 10.75IDD656 pKa = 3.68GNQGDD661 pKa = 4.1DD662 pKa = 3.38TLYY665 pKa = 11.21GDD667 pKa = 5.45DD668 pKa = 4.07VGTTSGFGNDD678 pKa = 4.0EE679 pKa = 4.41LNGGDD684 pKa = 4.21GNDD687 pKa = 3.57ILVGDD692 pKa = 4.97LGSDD696 pKa = 3.45KK697 pKa = 11.08LDD699 pKa = 3.83GGAGSDD705 pKa = 2.63WVYY708 pKa = 10.88YY709 pKa = 10.22QNSTSAIRR717 pKa = 11.84VDD719 pKa = 4.12LSSRR723 pKa = 11.84AAASGGYY730 pKa = 9.59AQGDD734 pKa = 3.81VISNIEE740 pKa = 4.34NILGTRR746 pKa = 11.84FSDD749 pKa = 4.31TIAGNGSANFLRR761 pKa = 11.84GGNSGDD767 pKa = 3.67TLIGNAGNDD776 pKa = 4.19TLWGEE781 pKa = 4.08QGNDD785 pKa = 3.12ILRR788 pKa = 11.84GDD790 pKa = 4.01AGADD794 pKa = 3.23ILNGGAGFDD803 pKa = 3.04WAYY806 pKa = 11.22YY807 pKa = 9.09HH808 pKa = 7.15LSDD811 pKa = 3.67AAVRR815 pKa = 11.84IDD817 pKa = 3.69LAGGAVQHH825 pKa = 6.53GGHH828 pKa = 6.87AEE830 pKa = 3.91GDD832 pKa = 3.75TLIGIEE838 pKa = 4.33NILGSVHH845 pKa = 7.63DD846 pKa = 5.97DD847 pKa = 3.42IITGNTGANHH857 pKa = 6.44LRR859 pKa = 11.84GHH861 pKa = 7.51LGNDD865 pKa = 3.21SLIGNEE871 pKa = 4.85GDD873 pKa = 3.4DD874 pKa = 4.22TLWGEE879 pKa = 4.35AGNDD883 pKa = 3.62VLRR886 pKa = 11.84GDD888 pKa = 4.22AGADD892 pKa = 3.49VLDD895 pKa = 5.02GGSGDD900 pKa = 3.44DD901 pKa = 2.9WAYY904 pKa = 9.73YY905 pKa = 9.49QKK907 pKa = 11.08SDD909 pKa = 3.27AAVVVDD915 pKa = 5.13LSDD918 pKa = 3.58GATEE922 pKa = 4.32QGGHH926 pKa = 5.6AQGDD930 pKa = 3.97TLISIEE936 pKa = 4.25RR937 pKa = 11.84VLGSTFGDD945 pKa = 4.0SITGNAGANFLRR957 pKa = 11.84GFDD960 pKa = 4.3GNDD963 pKa = 3.13NLIGNAGDD971 pKa = 3.57DD972 pKa = 4.21VLWGEE977 pKa = 4.6AGNDD981 pKa = 3.34ILRR984 pKa = 11.84GDD986 pKa = 4.26AGADD990 pKa = 3.56TLDD993 pKa = 4.19GGAGSDD999 pKa = 2.71WAYY1002 pKa = 10.31YY1003 pKa = 9.57QNSNAAINVNMADD1016 pKa = 3.77RR1017 pKa = 11.84AAEE1020 pKa = 4.27TGGHH1024 pKa = 5.54AQGDD1028 pKa = 3.94VLSNIEE1034 pKa = 4.08NVLGSFFADD1043 pKa = 4.78TIAGNAGANFLRR1055 pKa = 11.84GFNSGDD1061 pKa = 3.49MLIGNAGNDD1070 pKa = 3.82ILWGEE1075 pKa = 4.16QGNDD1079 pKa = 3.12ILRR1082 pKa = 11.84GDD1084 pKa = 3.94AGADD1088 pKa = 3.28VLNGGEE1094 pKa = 4.47GYY1096 pKa = 10.76DD1097 pKa = 2.97WAYY1100 pKa = 11.26YY1101 pKa = 9.58HH1102 pKa = 7.03LSDD1105 pKa = 4.77AAVSVDD1111 pKa = 3.68LTQGAVQHH1119 pKa = 6.42GGHH1122 pKa = 6.87AEE1124 pKa = 4.05GDD1126 pKa = 3.57TLIAIEE1132 pKa = 4.35HH1133 pKa = 5.78VLGSVHH1139 pKa = 7.52DD1140 pKa = 4.56DD1141 pKa = 3.86SIIGNSGANHH1151 pKa = 6.26LRR1153 pKa = 11.84GHH1155 pKa = 7.5LGNDD1159 pKa = 3.2SLVGNGGDD1167 pKa = 3.85DD1168 pKa = 3.8ILWGEE1173 pKa = 4.49AGDD1176 pKa = 4.11DD1177 pKa = 3.91VLRR1180 pKa = 11.84GDD1182 pKa = 4.63AGSDD1186 pKa = 3.37VLNGGTGNDD1195 pKa = 2.79WAYY1198 pKa = 10.09YY1199 pKa = 8.7QKK1201 pKa = 10.98SDD1203 pKa = 3.5AAIIVNLLDD1212 pKa = 3.87GLSEE1216 pKa = 4.38HH1217 pKa = 6.9GGHH1220 pKa = 7.31AEE1222 pKa = 3.81GDD1224 pKa = 3.71TLIGIEE1230 pKa = 4.11RR1231 pKa = 11.84VLGSLYY1237 pKa = 10.62DD1238 pKa = 4.23DD1239 pKa = 5.89SITGDD1244 pKa = 3.19NNANFLRR1251 pKa = 11.84GFNGNDD1257 pKa = 3.14TLVGNGGDD1265 pKa = 3.86DD1266 pKa = 3.71ILWGEE1271 pKa = 4.75LGTDD1275 pKa = 3.52TLTGGTGKK1283 pKa = 8.91DD1284 pKa = 3.19TFHH1287 pKa = 7.4FIADD1291 pKa = 4.07GATDD1295 pKa = 3.71TVTDD1299 pKa = 4.13FEE1301 pKa = 5.78DD1302 pKa = 5.98GIDD1305 pKa = 3.73LLSINWGATSLSQLAISEE1323 pKa = 4.37TGAGNVDD1330 pKa = 3.55TLISFGGNSILLQNFDD1346 pKa = 3.89HH1347 pKa = 6.79TLLTTDD1353 pKa = 4.2DD1354 pKa = 3.78FRR1356 pKa = 11.84FVV1358 pKa = 3.16

Molecular weight: 140.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7AFC1|A0A1M7AFC1_9RHOB Putrescine-binding periplasmic protein OS=Labrenzia suaedae OX=735517 GN=SAMN05444272_0526 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 8.99RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.7GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.48NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.32 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4539

0

4539

1505445

29

2916

331.7

35.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.586 ± 0.049

0.867 ± 0.011

5.7 ± 0.039

5.991 ± 0.04

3.886 ± 0.023

8.571 ± 0.054

1.919 ± 0.017

5.35 ± 0.03

3.761 ± 0.029

10.361 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.553 ± 0.019

2.792 ± 0.025

4.886 ± 0.033

3.275 ± 0.022

6.2 ± 0.045

6.155 ± 0.036

5.472 ± 0.045

7.169 ± 0.025

1.258 ± 0.015

2.249 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski