Endozoicomonas montiporae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Endozoicomonadaceae; Endozoicomonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3948 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A081N1Z6|A0A081N1Z6_9GAMM Pantothenate synthetase OS=Endozoicomonas montiporae OX=1027273 GN=panC PE=3 SV=1
MM1 pKa = 7.56KK2 pKa = 10.16KK3 pKa = 7.89WQCVICGLIYY13 pKa = 10.73DD14 pKa = 4.54EE15 pKa = 5.25AEE17 pKa = 3.82GWPEE21 pKa = 4.22DD22 pKa = 4.13GIEE25 pKa = 4.38PGTRR29 pKa = 11.84WEE31 pKa = 4.72DD32 pKa = 3.66VPEE35 pKa = 4.14DD36 pKa = 4.59WYY38 pKa = 11.62CPDD41 pKa = 4.63CGTDD45 pKa = 3.08KK46 pKa = 11.19TDD48 pKa = 3.64FEE50 pKa = 4.91MIEE53 pKa = 3.99ISS55 pKa = 3.39

Molecular weight: 6.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A081N0H2|A0A081N0H2_9GAMM Transketolase_C domain-containing protein OS=Endozoicomonas montiporae OX=1027273 GN=GZ77_22840 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.01RR12 pKa = 11.84ARR14 pKa = 11.84SHH16 pKa = 6.1GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.41NGRR28 pKa = 11.84AVINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.7GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3948

0

3948

1238042

40

7967

313.6

34.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.331 ± 0.048

1.124 ± 0.018

5.826 ± 0.07

6.475 ± 0.049

3.891 ± 0.029

7.126 ± 0.086

2.289 ± 0.02

5.733 ± 0.035

5.158 ± 0.046

10.302 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.682 ± 0.028

4.022 ± 0.042

4.227 ± 0.035

4.427 ± 0.041

5.327 ± 0.045

6.782 ± 0.043

5.36 ± 0.044

6.784 ± 0.039

1.222 ± 0.018

2.908 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski