Hymenobacter sp.

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter; unclassified Hymenobacter

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2772 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A519Q9P0|A0A519Q9P0_9BACT Uncharacterized protein OS=Hymenobacter sp. OX=1898978 GN=EOO60_01165 PE=4 SV=1
MM1 pKa = 7.94DD2 pKa = 4.12VPATDD7 pKa = 5.94ALLKK11 pKa = 9.72WAADD15 pKa = 3.73PQQQQAASIVFLDD28 pKa = 3.67ADD30 pKa = 4.18GGSSLEE36 pKa = 4.03TLRR39 pKa = 11.84LPGAYY44 pKa = 8.78CVRR47 pKa = 11.84YY48 pKa = 9.77RR49 pKa = 11.84EE50 pKa = 4.46EE51 pKa = 3.92FTQGDD56 pKa = 4.22EE57 pKa = 4.14QEE59 pKa = 4.35GAYY62 pKa = 8.64TCQLTLADD70 pKa = 3.98PSGWTLQATSQQVPAEE86 pKa = 3.98PAAASSTAA94 pKa = 3.21

Molecular weight: 9.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A519Q740|A0A519Q740_9BACT DUF4433 domain-containing protein OS=Hymenobacter sp. OX=1898978 GN=EOO60_03335 PE=4 SV=1
MM1 pKa = 7.39LHH3 pKa = 6.61VSWQKK8 pKa = 10.97RR9 pKa = 11.84KK10 pKa = 7.78TLLKK14 pKa = 10.61SITRR18 pKa = 11.84LPRR21 pKa = 11.84LPRR24 pKa = 11.84LPRR27 pKa = 11.84LPRR30 pKa = 11.84LPRR33 pKa = 11.84LPRR36 pKa = 11.84LPRR39 pKa = 11.84LPRR42 pKa = 11.84LPRR45 pKa = 11.84LPRR48 pKa = 11.84LPRR51 pKa = 11.84LPRR54 pKa = 11.84LPRR57 pKa = 11.84LPRR60 pKa = 11.84LPP62 pKa = 3.91

Molecular weight: 7.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2772

0

2772

561870

20

1264

202.7

22.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.004 ± 0.064

0.854 ± 0.02

4.671 ± 0.034

5.108 ± 0.055

4.064 ± 0.039

6.984 ± 0.058

2.105 ± 0.027

4.502 ± 0.036

4.281 ± 0.048

11.132 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.838 ± 0.026

3.957 ± 0.06

4.939 ± 0.037

5.0 ± 0.038

5.687 ± 0.045

6.083 ± 0.044

6.76 ± 0.063

6.789 ± 0.041

1.351 ± 0.022

3.891 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski