Alistipes indistinctus YIT 12060

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes indistinctus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2348 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G5H5X6|G5H5X6_9BACT Uncharacterized protein OS=Alistipes indistinctus YIT 12060 OX=742725 GN=HMPREF9450_00336 PE=4 SV=1
MM1 pKa = 7.64KK2 pKa = 10.09KK3 pKa = 10.31YY4 pKa = 9.98KK5 pKa = 10.64CEE7 pKa = 3.96VCGYY11 pKa = 9.71IYY13 pKa = 10.59DD14 pKa = 4.25PAVGDD19 pKa = 3.97PDD21 pKa = 4.21NGIEE25 pKa = 4.26PGTPFEE31 pKa = 5.37DD32 pKa = 4.77LPEE35 pKa = 4.74DD36 pKa = 3.81WVCPVCQEE44 pKa = 3.83GKK46 pKa = 10.36EE47 pKa = 4.17VFEE50 pKa = 4.56EE51 pKa = 4.52VV52 pKa = 3.24

Molecular weight: 5.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G5H6Y4|G5H6Y4_9BACT Ribosome-binding factor A OS=Alistipes indistinctus YIT 12060 OX=742725 GN=rbfA PE=3 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.39KK6 pKa = 9.62RR7 pKa = 11.84KK8 pKa = 6.72RR9 pKa = 11.84HH10 pKa = 5.17KK11 pKa = 10.05MATHH15 pKa = 6.02KK16 pKa = 10.34RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.3NRR25 pKa = 11.84HH26 pKa = 5.61KK27 pKa = 10.81KK28 pKa = 9.9NKK30 pKa = 9.46

Molecular weight: 3.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2348

0

2348

832160

21

2245

354.4

39.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.573 ± 0.048

1.16 ± 0.019

5.487 ± 0.036

6.039 ± 0.046

4.246 ± 0.032

7.798 ± 0.04

1.842 ± 0.023

6.195 ± 0.044

5.058 ± 0.04

9.366 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.601 ± 0.02

4.082 ± 0.034

4.464 ± 0.031

3.352 ± 0.023

5.878 ± 0.045

5.966 ± 0.037

5.726 ± 0.038

6.989 ± 0.041

1.211 ± 0.025

3.968 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski