Candidatus Kryptonium thompsoni

Taxonomy: cellular organisms; Bacteria; FCB group; Candidatus Kryptonia; Candidatus Kryptonium

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2301 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P1LK86|A0A0P1LK86_9BACT Spermidine/putrescine import ATP-binding protein PotA OS=Candidatus Kryptonium thompsoni OX=1633631 GN=potA PE=3 SV=1
MM1 pKa = 7.61LWTPEE6 pKa = 4.51LIRR9 pKa = 11.84YY10 pKa = 9.4LEE12 pKa = 4.42GAPWPATKK20 pKa = 10.22RR21 pKa = 11.84EE22 pKa = 4.2LIEE25 pKa = 3.59YY26 pKa = 9.0AKK28 pKa = 10.56RR29 pKa = 11.84IGAPPEE35 pKa = 4.1VIQNLEE41 pKa = 4.03EE42 pKa = 5.77LEE44 pKa = 4.45DD45 pKa = 3.71TDD47 pKa = 4.38EE48 pKa = 4.57EE49 pKa = 5.19YY50 pKa = 11.41NGIEE54 pKa = 5.1DD55 pKa = 3.4IWPDD59 pKa = 3.56YY60 pKa = 11.16SPEE63 pKa = 4.71DD64 pKa = 3.55EE65 pKa = 5.09DD66 pKa = 6.04DD67 pKa = 3.91YY68 pKa = 11.95LFGEE72 pKa = 4.34EE73 pKa = 5.4DD74 pKa = 3.67EE75 pKa = 4.71YY76 pKa = 12.03

Molecular weight: 9.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P1LLX2|A0A0P1LLX2_9BACT Protoheme IX farnesyltransferase OS=Candidatus Kryptonium thompsoni OX=1633631 GN=ctaB PE=3 SV=1
MM1 pKa = 7.82PNPKK5 pKa = 9.16RR6 pKa = 11.84RR7 pKa = 11.84HH8 pKa = 4.77SRR10 pKa = 11.84SRR12 pKa = 11.84RR13 pKa = 11.84DD14 pKa = 3.19KK15 pKa = 10.7RR16 pKa = 11.84RR17 pKa = 11.84ANYY20 pKa = 9.97KK21 pKa = 8.42PTAPTLSEE29 pKa = 4.56CPQCHH34 pKa = 5.64EE35 pKa = 4.48PKK37 pKa = 10.24LPHH40 pKa = 6.53RR41 pKa = 11.84ACPKK45 pKa = 8.68CGYY48 pKa = 8.44YY49 pKa = 10.01HH50 pKa = 7.0GRR52 pKa = 11.84TVIAPKK58 pKa = 10.18EE59 pKa = 3.89

Molecular weight: 6.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2301

0

2301

813688

39

2232

353.6

40.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.047 ± 0.043

0.723 ± 0.018

5.155 ± 0.041

7.277 ± 0.064

5.543 ± 0.049

6.886 ± 0.05

1.444 ± 0.02

8.926 ± 0.05

8.044 ± 0.059

9.348 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.96 ± 0.022

4.685 ± 0.038

3.894 ± 0.029

2.562 ± 0.028

4.563 ± 0.037

5.907 ± 0.042

4.655 ± 0.038

7.331 ± 0.045

1.059 ± 0.022

3.991 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski