Phytohabitans suffuscus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Phytohabitans

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9401 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6F8YCT6|A0A6F8YCT6_9ACTN Acyl dehydratase OS=Phytohabitans suffuscus OX=624315 GN=Psuf_010840 PE=4 SV=1
MM1 pKa = 7.34LPVAGALLALGLIAAPAAAAPTGDD25 pKa = 3.26TTTTFSVLAGTLDD38 pKa = 3.56VVVPATSTVGTGGAPGTSIAGQLGTITVDD67 pKa = 3.47DD68 pKa = 3.87TRR70 pKa = 11.84AAADD74 pKa = 3.8ASWVTTVTSTDD85 pKa = 3.74FTTGAAGASEE95 pKa = 4.64TVPATDD101 pKa = 3.2VDD103 pKa = 4.61YY104 pKa = 11.68SSGPATATTGNGTFTPSGAAAPIGTGITAFTHH136 pKa = 7.1AGGTGNNSAAWNPTLTVNVPLANVSGTYY164 pKa = 9.53TGTVTHH170 pKa = 6.66SVAA173 pKa = 4.02

Molecular weight: 16.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6F8YZJ9|A0A6F8YZJ9_9ACTN dTDP-4-dehydrorhamnose reductase OS=Phytohabitans suffuscus OX=624315 GN=rfbD PE=3 SV=1
MM1 pKa = 7.51SLPHH5 pKa = 6.62SGRR8 pKa = 11.84SSGKK12 pKa = 8.87RR13 pKa = 11.84NPPARR18 pKa = 11.84PTMATPSATTNRR30 pKa = 11.84RR31 pKa = 11.84WIATVKK37 pKa = 10.61NEE39 pKa = 3.68TSAAPRR45 pKa = 11.84LVTAQMPATLTTRR58 pKa = 11.84HH59 pKa = 5.41STTGQRR65 pKa = 11.84RR66 pKa = 11.84RR67 pKa = 11.84HH68 pKa = 5.99HH69 pKa = 6.85SPAQHH74 pKa = 6.39SSPTARR80 pKa = 11.84SIVVRR85 pKa = 11.84PRR87 pKa = 11.84STPWSKK93 pKa = 9.51LTAAMASARR102 pKa = 11.84ATATRR107 pKa = 11.84KK108 pKa = 8.37KK109 pKa = 7.28TTSTNQSRR117 pKa = 11.84AVRR120 pKa = 11.84RR121 pKa = 11.84AGRR124 pKa = 11.84RR125 pKa = 11.84ASGG128 pKa = 3.09

Molecular weight: 13.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9401

0

9401

2924729

39

7448

311.1

33.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.102 ± 0.051

0.81 ± 0.008

5.9 ± 0.021

5.06 ± 0.025

2.715 ± 0.013

9.534 ± 0.031

2.147 ± 0.012

3.19 ± 0.02

1.61 ± 0.017

10.141 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.695 ± 0.009

1.768 ± 0.019

6.371 ± 0.025

2.667 ± 0.015

8.604 ± 0.03

5.007 ± 0.02

6.004 ± 0.025

8.948 ± 0.028

1.629 ± 0.012

2.098 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski