Lactobacillus diolivorans DSM 14421

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus; Lentilactobacillus diolivorans

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2962 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R1SE72|A0A0R1SE72_9LACO Integral membrane protein OS=Lactobacillus diolivorans DSM 14421 OX=1423739 GN=FC85_GL001011 PE=4 SV=1
MM1 pKa = 7.1YY2 pKa = 9.71WDD4 pKa = 4.28GTDD7 pKa = 4.21FDD9 pKa = 4.2QTPILNNDD17 pKa = 3.03WTQSLTEE24 pKa = 4.32IEE26 pKa = 4.07NLQIFGDD33 pKa = 3.84EE34 pKa = 4.4LYY36 pKa = 9.3ITVTQHH42 pKa = 5.93QSPTKK47 pKa = 8.48VTYY50 pKa = 10.35IEE52 pKa = 4.07

Molecular weight: 6.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R1SBY5|A0A0R1SBY5_9LACO ABC superfamily ATP binding cassette transporter membrane protein OS=Lactobacillus diolivorans DSM 14421 OX=1423739 GN=FC85_GL002781 PE=4 SV=1
MM1 pKa = 7.32NLQFFSHH8 pKa = 6.49HH9 pKa = 6.55KK10 pKa = 10.71GGGSTANGRR19 pKa = 11.84NSAGRR24 pKa = 11.84RR25 pKa = 11.84LGAKK29 pKa = 9.65AADD32 pKa = 3.96GSSVHH37 pKa = 6.49SGSIIYY43 pKa = 9.3RR44 pKa = 11.84QRR46 pKa = 11.84GTHH49 pKa = 6.81IYY51 pKa = 9.6PGNNVSRR58 pKa = 11.84GNDD61 pKa = 3.23DD62 pKa = 3.48TLFALVDD69 pKa = 3.65GVVRR73 pKa = 11.84FEE75 pKa = 4.16RR76 pKa = 11.84KK77 pKa = 9.84GRR79 pKa = 11.84DD80 pKa = 3.02KK81 pKa = 11.03RR82 pKa = 11.84QVSVYY87 pKa = 9.84PVAEE91 pKa = 3.97TAKK94 pKa = 10.69

Molecular weight: 10.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2962

0

2962

886848

49

1950

299.4

33.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.564 ± 0.047

0.468 ± 0.012

5.821 ± 0.05

4.592 ± 0.051

4.37 ± 0.038

6.774 ± 0.037

2.242 ± 0.025

7.5 ± 0.047

6.703 ± 0.05

9.433 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.629 ± 0.022

5.245 ± 0.037

3.709 ± 0.027

4.608 ± 0.04

3.969 ± 0.033

6.453 ± 0.04

6.243 ± 0.042

6.941 ± 0.035

1.069 ± 0.016

3.657 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski