Mycobacteroides abscessus subsp. abscessus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides abscessus

Average proteome isoelectric point is 7.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9486 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N0E9G0|A0A1N0E9G0_9MYCO Uncharacterized protein OS=Mycobacteroides abscessus subsp. abscessus OX=1185650 GN=SAMEA2259684_05673 PE=4 SV=1
MM1 pKa = 8.13DD2 pKa = 5.41PPFGQFDD9 pKa = 3.83SGADD13 pKa = 3.59TPEE16 pKa = 5.26AGADD20 pKa = 3.73DD21 pKa = 4.83HH22 pKa = 8.46DD23 pKa = 5.26LMIGNTLAEE32 pKa = 4.26PAGFAVPHH40 pKa = 6.5TCTSHH45 pKa = 6.26

Molecular weight: 4.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M9WNR9|A0A1M9WNR9_9MYCO Cobaltochelatase subunit CobN OS=Mycobacteroides abscessus subsp. abscessus OX=1185650 GN=cobN_1 PE=4 SV=1
MM1 pKa = 7.42SRR3 pKa = 11.84RR4 pKa = 11.84KK5 pKa = 10.13ASGSALGSGAAGRR18 pKa = 11.84SRR20 pKa = 11.84PRR22 pKa = 11.84ARR24 pKa = 11.84ASARR28 pKa = 11.84ASTTIVRR35 pKa = 11.84PALSSRR41 pKa = 11.84ARR43 pKa = 11.84TASSASRR50 pKa = 11.84WLSTSAA56 pKa = 4.12

Molecular weight: 5.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9486

0

9486

1295986

29

1410

136.6

14.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.107 ± 0.039

1.379 ± 0.015

5.243 ± 0.028

4.608 ± 0.03

2.789 ± 0.019

8.464 ± 0.036

2.326 ± 0.02

4.371 ± 0.019

2.338 ± 0.022

8.838 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.627 ± 0.016

2.367 ± 0.019

6.243 ± 0.03

3.122 ± 0.025

7.985 ± 0.036

7.504 ± 0.052

6.308 ± 0.029

8.085 ± 0.033

1.411 ± 0.015

1.852 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski