Amino acid dipepetide frequency for Ateles paniscus polyomavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.581AlaAla: 7.581 ± 1.39
0.0AlaCys: 0.0 ± 0.0
3.79AlaAsp: 3.79 ± 0.987
5.054AlaGlu: 5.054 ± 1.264
2.527AlaPhe: 2.527 ± 1.591
2.527AlaGly: 2.527 ± 0.506
2.527AlaHis: 2.527 ± 1.098
3.79AlaIle: 3.79 ± 1.754
4.422AlaLys: 4.422 ± 1.256
5.054AlaLeu: 5.054 ± 1.95
0.632AlaMet: 0.632 ± 0.641
0.0AlaAsn: 0.0 ± 0.0
1.263AlaPro: 1.263 ± 0.74
0.632AlaGln: 0.632 ± 0.641
4.422AlaArg: 4.422 ± 1.639
6.317AlaSer: 6.317 ± 2.686
1.895AlaThr: 1.895 ± 0.493
6.949AlaVal: 6.949 ± 2.672
2.527AlaTrp: 2.527 ± 1.605
3.159AlaTyr: 3.159 ± 1.48
0.0AlaXaa: 0.0 ± 0.0
Cys
1.263CysAla: 1.263 ± 0.796
0.632CysCys: 0.632 ± 0.899
0.0CysAsp: 0.0 ± 0.0
1.895CysGlu: 1.895 ± 0.892
1.263CysPhe: 1.263 ± 0.802
1.895CysGly: 1.895 ± 0.747
0.0CysHis: 0.0 ± 0.0
0.632CysIle: 0.632 ± 0.899
1.895CysLys: 1.895 ± 0.729
2.527CysLeu: 2.527 ± 1.124
0.0CysMet: 0.0 ± 0.0
1.895CysAsn: 1.895 ± 0.892
3.79CysPro: 3.79 ± 1.96
0.632CysGln: 0.632 ± 0.398
0.0CysArg: 0.0 ± 0.0
0.632CysSer: 0.632 ± 0.398
3.79CysThr: 3.79 ± 1.783
0.632CysVal: 0.632 ± 0.899
0.0CysTrp: 0.0 ± 0.0
1.895CysTyr: 1.895 ± 1.657
0.0CysXaa: 0.0 ± 0.0
Asp
3.79AspAla: 3.79 ± 0.987
1.263AspCys: 1.263 ± 0.802
3.159AspAsp: 3.159 ± 0.765
1.263AspGlu: 1.263 ± 1.121
1.895AspPhe: 1.895 ± 1.193
3.79AspGly: 3.79 ± 1.494
1.263AspHis: 1.263 ± 0.796
2.527AspIle: 2.527 ± 1.864
5.054AspLys: 5.054 ± 0.502
3.79AspLeu: 3.79 ± 3.316
1.895AspMet: 1.895 ± 0.493
1.263AspAsn: 1.263 ± 0.527
6.949AspPro: 6.949 ± 1.728
1.263AspGln: 1.263 ± 0.527
2.527AspArg: 2.527 ± 1.124
3.159AspSer: 3.159 ± 0.765
0.632AspThr: 0.632 ± 0.398
5.685AspVal: 5.685 ± 2.139
0.632AspTrp: 0.632 ± 0.641
1.895AspTyr: 1.895 ± 0.877
0.0AspXaa: 0.0 ± 0.0
Glu
4.422GluAla: 4.422 ± 2.259
2.527GluCys: 2.527 ± 1.605
3.159GluAsp: 3.159 ± 0.41
7.581GluGlu: 7.581 ± 1.233
3.79GluPhe: 3.79 ± 1.163
6.317GluGly: 6.317 ± 1.142
1.263GluHis: 1.263 ± 0.802
0.632GluIle: 0.632 ± 0.398
3.79GluLys: 3.79 ± 1.171
5.685GluLeu: 5.685 ± 0.762
0.632GluMet: 0.632 ± 0.398
5.054GluAsn: 5.054 ± 1.409
3.159GluPro: 3.159 ± 0.904
1.263GluGln: 1.263 ± 0.802
0.632GluArg: 0.632 ± 0.398
3.159GluSer: 3.159 ± 1.368
4.422GluThr: 4.422 ± 1.382
5.685GluVal: 5.685 ± 2.015
1.263GluTrp: 1.263 ± 0.796
3.159GluTyr: 3.159 ± 0.924
0.0GluXaa: 0.0 ± 0.0
Phe
6.949PheAla: 6.949 ± 1.881
2.527PheCys: 2.527 ± 1.124
1.263PheAsp: 1.263 ± 0.549
3.79PheGlu: 3.79 ± 2.387
0.632PhePhe: 0.632 ± 0.641
2.527PheGly: 2.527 ± 1.55
1.263PheHis: 1.263 ± 1.121
0.632PheIle: 0.632 ± 0.398
3.159PheLys: 3.159 ± 1.431
3.79PheLeu: 3.79 ± 1.774
0.0PheMet: 0.0 ± 0.0
2.527PheAsn: 2.527 ± 0.699
3.159PhePro: 3.159 ± 0.41
2.527PheGln: 2.527 ± 1.098
0.632PheArg: 0.632 ± 0.398
3.79PheSer: 3.79 ± 1.171
2.527PheThr: 2.527 ± 1.055
0.632PheVal: 0.632 ± 0.398
0.632PheTrp: 0.632 ± 0.899
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
4.422GlyAla: 4.422 ± 2.967
0.632GlyCys: 0.632 ± 0.398
5.054GlyAsp: 5.054 ± 1.048
3.79GlyGlu: 3.79 ± 1.187
2.527GlyPhe: 2.527 ± 1.055
5.685GlyGly: 5.685 ± 0.762
0.0GlyHis: 0.0 ± 0.0
4.422GlyIle: 4.422 ± 1.461
5.685GlyLys: 5.685 ± 1.933
5.685GlyLeu: 5.685 ± 2.665
3.159GlyMet: 3.159 ± 0.904
3.159GlyAsn: 3.159 ± 0.873
4.422GlyPro: 4.422 ± 0.352
3.79GlyGln: 3.79 ± 2.026
0.632GlyArg: 0.632 ± 0.641
2.527GlySer: 2.527 ± 1.075
3.159GlyThr: 3.159 ± 1.193
5.685GlyVal: 5.685 ± 0.201
0.632GlyTrp: 0.632 ± 0.641
1.895GlyTyr: 1.895 ± 1.145
0.0GlyXaa: 0.0 ± 0.0
His
0.632HisAla: 0.632 ± 0.899
1.263HisCys: 1.263 ± 0.796
0.632HisAsp: 0.632 ± 0.398
0.632HisGlu: 0.632 ± 0.398
1.895HisPhe: 1.895 ± 1.9
1.895HisGly: 1.895 ± 0.892
0.632HisHis: 0.632 ± 0.398
1.263HisIle: 1.263 ± 0.74
0.632HisLys: 0.632 ± 0.398
1.895HisLeu: 1.895 ± 0.892
0.632HisMet: 0.632 ± 0.561
0.0HisAsn: 0.0 ± 0.0
1.263HisPro: 1.263 ± 0.802
1.895HisGln: 1.895 ± 1.922
1.263HisArg: 1.263 ± 0.802
0.632HisSer: 0.632 ± 0.398
1.263HisThr: 1.263 ± 0.74
1.263HisVal: 1.263 ± 0.796
0.0HisTrp: 0.0 ± 0.0
1.895HisTyr: 1.895 ± 0.713
0.0HisXaa: 0.0 ± 0.0
Ile
1.895IleAla: 1.895 ± 0.713
0.632IleCys: 0.632 ± 0.398
1.263IleAsp: 1.263 ± 0.796
6.317IleGlu: 6.317 ± 2.686
1.895IlePhe: 1.895 ± 1.193
1.895IleGly: 1.895 ± 1.265
0.632IleHis: 0.632 ± 0.641
0.632IleIle: 0.632 ± 0.899
3.159IleLys: 3.159 ± 0.41
6.949IleLeu: 6.949 ± 2.08
1.895IleMet: 1.895 ± 0.713
1.895IleAsn: 1.895 ± 1.193
1.895IlePro: 1.895 ± 0.729
0.0IleGln: 0.0 ± 0.0
2.527IleArg: 2.527 ± 0.506
4.422IleSer: 4.422 ± 1.461
1.263IleThr: 1.263 ± 1.121
1.895IleVal: 1.895 ± 0.493
1.263IleTrp: 1.263 ± 1.096
1.895IleTyr: 1.895 ± 0.877
0.0IleXaa: 0.0 ± 0.0
Lys
4.422LysAla: 4.422 ± 1.74
1.263LysCys: 1.263 ± 0.527
1.895LysAsp: 1.895 ± 0.729
3.79LysGlu: 3.79 ± 1.11
1.895LysPhe: 1.895 ± 0.892
4.422LysGly: 4.422 ± 1.041
2.527LysHis: 2.527 ± 1.605
3.79LysIle: 3.79 ± 1.163
7.581LysLys: 7.581 ± 2.325
7.581LysLeu: 7.581 ± 2.887
2.527LysMet: 2.527 ± 2.316
3.79LysAsn: 3.79 ± 0.876
2.527LysPro: 2.527 ± 1.055
1.263LysGln: 1.263 ± 0.802
3.159LysArg: 3.159 ± 0.795
4.422LysSer: 4.422 ± 2.137
5.685LysThr: 5.685 ± 3.039
2.527LysVal: 2.527 ± 0.692
0.0LysTrp: 0.0 ± 0.0
1.895LysTyr: 1.895 ± 0.713
0.0LysXaa: 0.0 ± 0.0
Leu
3.79LeuAla: 3.79 ± 1.454
1.895LeuCys: 1.895 ± 0.747
7.581LeuAsp: 7.581 ± 2.226
5.054LeuGlu: 5.054 ± 1.066
5.054LeuPhe: 5.054 ± 1.421
3.79LeuGly: 3.79 ± 1.683
1.263LeuHis: 1.263 ± 0.802
5.054LeuIle: 5.054 ± 1.066
3.79LeuLys: 3.79 ± 1.163
10.739LeuLeu: 10.739 ± 3.414
5.054LeuMet: 5.054 ± 0.687
6.949LeuAsn: 6.949 ± 0.478
5.054LeuPro: 5.054 ± 2.273
7.581LeuGln: 7.581 ± 1.489
1.895LeuArg: 1.895 ± 0.747
4.422LeuSer: 4.422 ± 2.27
7.581LeuThr: 7.581 ± 2.606
5.685LeuVal: 5.685 ± 1.119
3.159LeuTrp: 3.159 ± 0.41
3.159LeuTyr: 3.159 ± 0.41
0.0LeuXaa: 0.0 ± 0.0
Met
5.685MetAla: 5.685 ± 0.201
0.632MetCys: 0.632 ± 0.899
2.527MetAsp: 2.527 ± 1.605
2.527MetGlu: 2.527 ± 0.692
2.527MetPhe: 2.527 ± 1.075
2.527MetGly: 2.527 ± 1.864
0.632MetHis: 0.632 ± 0.899
0.632MetIle: 0.632 ± 0.561
1.263MetLys: 1.263 ± 0.802
1.895MetLeu: 1.895 ± 1.125
1.263MetMet: 1.263 ± 0.549
3.79MetAsn: 3.79 ± 2.026
0.632MetPro: 0.632 ± 0.899
0.632MetGln: 0.632 ± 0.398
0.632MetArg: 0.632 ± 0.641
0.0MetSer: 0.0 ± 0.0
1.263MetThr: 1.263 ± 0.549
0.0MetVal: 0.0 ± 0.0
0.632MetTrp: 0.632 ± 0.561
1.263MetTyr: 1.263 ± 0.74
0.0MetXaa: 0.0 ± 0.0
Asn
1.263AsnAla: 1.263 ± 0.527
1.263AsnCys: 1.263 ± 0.796
4.422AsnAsp: 4.422 ± 1.74
2.527AsnGlu: 2.527 ± 1.055
3.79AsnPhe: 3.79 ± 0.418
2.527AsnGly: 2.527 ± 1.055
0.632AsnHis: 0.632 ± 0.641
3.159AsnIle: 3.159 ± 1.368
2.527AsnLys: 2.527 ± 1.016
5.054AsnLeu: 5.054 ± 1.866
0.632AsnMet: 0.632 ± 1.05
0.632AsnAsn: 0.632 ± 0.561
3.159AsnPro: 3.159 ± 1.419
0.0AsnGln: 0.0 ± 0.0
0.632AsnArg: 0.632 ± 0.398
3.79AsnSer: 3.79 ± 1.774
3.159AsnThr: 3.159 ± 1.639
2.527AsnVal: 2.527 ± 0.902
0.632AsnTrp: 0.632 ± 0.398
2.527AsnTyr: 2.527 ± 1.023
0.0AsnXaa: 0.0 ± 0.0
Pro
1.895ProAla: 1.895 ± 0.493
0.0ProCys: 0.0 ± 0.0
5.685ProAsp: 5.685 ± 1.381
3.159ProGlu: 3.159 ± 1.649
0.632ProPhe: 0.632 ± 0.398
5.054ProGly: 5.054 ± 1.95
0.632ProHis: 0.632 ± 0.398
1.895ProIle: 1.895 ± 1.013
3.159ProLys: 3.159 ± 1.231
5.054ProLeu: 5.054 ± 0.838
1.263ProMet: 1.263 ± 0.944
3.159ProAsn: 3.159 ± 0.873
3.79ProPro: 3.79 ± 0.943
3.79ProGln: 3.79 ± 1.561
5.054ProArg: 5.054 ± 3.065
6.949ProSer: 6.949 ± 1.397
3.159ProThr: 3.159 ± 0.795
3.159ProVal: 3.159 ± 2.174
0.0ProTrp: 0.0 ± 0.0
0.632ProTyr: 0.632 ± 0.561
0.0ProXaa: 0.0 ± 0.0
Gln
2.527GlnAla: 2.527 ± 0.699
0.632GlnCys: 0.632 ± 0.899
2.527GlnAsp: 2.527 ± 1.098
3.79GlnGlu: 3.79 ± 1.783
0.632GlnPhe: 0.632 ± 0.561
1.263GlnGly: 1.263 ± 0.796
1.263GlnHis: 1.263 ± 0.802
3.159GlnIle: 3.159 ± 0.88
1.263GlnLys: 1.263 ± 0.527
3.159GlnLeu: 3.159 ± 1.65
1.263GlnMet: 1.263 ± 0.809
0.632GlnAsn: 0.632 ± 0.398
2.527GlnPro: 2.527 ± 0.699
1.895GlnGln: 1.895 ± 1.013
1.263GlnArg: 1.263 ± 0.549
0.632GlnSer: 0.632 ± 0.561
1.895GlnThr: 1.895 ± 0.493
3.159GlnVal: 3.159 ± 0.904
0.0GlnTrp: 0.0 ± 0.0
1.895GlnTyr: 1.895 ± 1.013
0.0GlnXaa: 0.0 ± 0.0
Arg
1.895ArgAla: 1.895 ± 1.145
1.263ArgCys: 1.263 ± 0.802
3.159ArgAsp: 3.159 ± 1.154
4.422ArgGlu: 4.422 ± 1.581
3.159ArgPhe: 3.159 ± 1.431
2.527ArgGly: 2.527 ± 0.506
1.263ArgHis: 1.263 ± 0.549
0.632ArgIle: 0.632 ± 0.398
3.79ArgLys: 3.79 ± 1.327
5.054ArgLeu: 5.054 ± 0.681
1.263ArgMet: 1.263 ± 1.121
1.263ArgAsn: 1.263 ± 0.796
2.527ArgPro: 2.527 ± 1.098
2.527ArgGln: 2.527 ± 0.808
3.159ArgArg: 3.159 ± 1.624
0.0ArgSer: 0.0 ± 0.0
0.0ArgThr: 0.0 ± 0.0
1.895ArgVal: 1.895 ± 0.493
0.632ArgTrp: 0.632 ± 0.641
2.527ArgTyr: 2.527 ± 1.645
0.0ArgXaa: 0.0 ± 0.0
Ser
6.317SerAla: 6.317 ± 1.164
1.263SerCys: 1.263 ± 0.527
3.159SerAsp: 3.159 ± 1.368
1.895SerGlu: 1.895 ± 1.125
1.895SerPhe: 1.895 ± 0.713
3.79SerGly: 3.79 ± 1.426
0.632SerHis: 0.632 ± 0.641
4.422SerIle: 4.422 ± 0.917
5.054SerLys: 5.054 ± 0.502
9.476SerLeu: 9.476 ± 0.929
1.895SerMet: 1.895 ± 0.493
1.895SerAsn: 1.895 ± 0.747
1.895SerPro: 1.895 ± 0.747
1.895SerGln: 1.895 ± 1.193
4.422SerArg: 4.422 ± 2.868
5.685SerSer: 5.685 ± 1.119
2.527SerThr: 2.527 ± 1.645
4.422SerVal: 4.422 ± 0.639
0.632SerTrp: 0.632 ± 0.398
2.527SerTyr: 2.527 ± 0.699
0.0SerXaa: 0.0 ± 0.0
Thr
1.263ThrAla: 1.263 ± 1.121
3.79ThrCys: 3.79 ± 1.897
1.263ThrAsp: 1.263 ± 0.796
3.159ThrGlu: 3.159 ± 0.41
1.895ThrPhe: 1.895 ± 0.877
3.159ThrGly: 3.159 ± 1.419
1.263ThrHis: 1.263 ± 0.796
2.527ThrIle: 2.527 ± 1.098
0.632ThrLys: 0.632 ± 0.398
5.054ThrLeu: 5.054 ± 0.838
2.527ThrMet: 2.527 ± 0.506
1.895ThrAsn: 1.895 ± 1.682
3.79ThrPro: 3.79 ± 1.279
1.895ThrGln: 1.895 ± 1.013
3.79ThrArg: 3.79 ± 1.163
3.159ThrSer: 3.159 ± 1.971
3.159ThrThr: 3.159 ± 0.795
5.685ThrVal: 5.685 ± 1.381
0.632ThrTrp: 0.632 ± 0.899
1.895ThrTyr: 1.895 ± 1.265
0.0ThrXaa: 0.0 ± 0.0
Val
2.527ValAla: 2.527 ± 0.506
1.263ValCys: 1.263 ± 0.549
0.0ValAsp: 0.0 ± 0.0
5.054ValGlu: 5.054 ± 1.214
1.263ValPhe: 1.263 ± 0.796
6.949ValGly: 6.949 ± 2.725
1.263ValHis: 1.263 ± 0.74
3.79ValIle: 3.79 ± 1.647
6.317ValLys: 6.317 ± 2.203
5.685ValLeu: 5.685 ± 1.653
3.159ValMet: 3.159 ± 1.154
3.79ValAsn: 3.79 ± 0.819
4.422ValPro: 4.422 ± 1.104
0.0ValGln: 0.0 ± 0.0
1.895ValArg: 1.895 ± 0.493
5.054ValSer: 5.054 ± 1.012
3.159ValThr: 3.159 ± 1.419
2.527ValVal: 2.527 ± 0.692
0.632ValTrp: 0.632 ± 0.899
3.159ValTyr: 3.159 ± 0.41
0.0ValXaa: 0.0 ± 0.0
Trp
1.263TrpAla: 1.263 ± 0.74
0.632TrpCys: 0.632 ± 0.398
2.527TrpAsp: 2.527 ± 0.808
0.632TrpGlu: 0.632 ± 0.561
1.263TrpPhe: 1.263 ± 1.799
1.263TrpGly: 1.263 ± 1.799
0.632TrpHis: 0.632 ± 0.398
0.0TrpIle: 0.0 ± 0.0
0.632TrpLys: 0.632 ± 0.398
0.0TrpLeu: 0.0 ± 0.0
0.632TrpMet: 0.632 ± 0.641
0.632TrpAsn: 0.632 ± 0.398
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.632TrpArg: 0.632 ± 0.641
2.527TrpSer: 2.527 ± 1.605
0.0TrpThr: 0.0 ± 0.0
0.632TrpVal: 0.632 ± 0.641
0.632TrpTrp: 0.632 ± 0.398
0.632TrpTyr: 0.632 ± 0.398
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.263TyrAla: 1.263 ± 1.282
1.895TyrCys: 1.895 ± 1.657
0.632TyrAsp: 0.632 ± 0.641
1.263TyrGlu: 1.263 ± 0.527
2.527TyrPhe: 2.527 ± 1.55
3.159TyrGly: 3.159 ± 0.904
1.895TyrHis: 1.895 ± 0.892
0.632TyrIle: 0.632 ± 0.641
3.159TyrLys: 3.159 ± 1.639
4.422TyrLeu: 4.422 ± 1.808
0.0TyrMet: 0.0 ± 0.0
1.263TyrAsn: 1.263 ± 0.527
1.895TyrPro: 1.895 ± 1.682
1.895TyrGln: 1.895 ± 0.877
3.79TyrArg: 3.79 ± 0.819
4.422TyrSer: 4.422 ± 1.461
1.895TyrThr: 1.895 ± 0.747
1.263TyrVal: 1.263 ± 0.796
0.632TyrTrp: 0.632 ± 0.398
1.895TyrTyr: 1.895 ± 1.265
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1584 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski