Chitiniphilus eburneus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chitiniphilus

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3883 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4U0PXP8|A0A4U0PXP8_9NEIS Ni_hydr_CYTB domain-containing protein OS=Chitiniphilus eburneus OX=2571148 GN=FAZ21_10765 PE=4 SV=1
MM1 pKa = 7.21NMAADD6 pKa = 3.77MPIPFVFTDD15 pKa = 3.43NAATKK20 pKa = 10.56VKK22 pKa = 10.7DD23 pKa = 4.58LIDD26 pKa = 3.81EE27 pKa = 4.55EE28 pKa = 5.12GNPEE32 pKa = 3.75LKK34 pKa = 10.69LRR36 pKa = 11.84VFVTGGGCSGFQYY49 pKa = 10.94GFTFDD54 pKa = 5.2EE55 pKa = 4.78IVNDD59 pKa = 4.48DD60 pKa = 3.74DD61 pKa = 4.53TEE63 pKa = 4.23VSKK66 pKa = 11.49GGVTLLIDD74 pKa = 3.8PMSYY78 pKa = 10.31QYY80 pKa = 11.58LVGAEE85 pKa = 3.69IDD87 pKa = 3.85YY88 pKa = 11.28VEE90 pKa = 4.54SLEE93 pKa = 4.67GSQFTIKK100 pKa = 10.63NPNAVSTCGCGSSFSVV116 pKa = 3.54

Molecular weight: 12.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4U0PPK8|A0A4U0PPK8_9NEIS PTS system mannose/fructose/sorbose family transporter subunit IID OS=Chitiniphilus eburneus OX=2571148 GN=FAZ21_14450 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.58RR14 pKa = 11.84THH16 pKa = 6.08GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.02TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLNARR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.27GRR39 pKa = 11.84ARR41 pKa = 11.84LGVV44 pKa = 3.34

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3883

0

3883

1243141

29

2835

320.1

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.334 ± 0.067

0.924 ± 0.013

5.631 ± 0.033

5.41 ± 0.039

3.48 ± 0.025

8.146 ± 0.047

2.293 ± 0.023

4.459 ± 0.031

3.107 ± 0.036

11.156 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.198 ± 0.02

2.803 ± 0.029

5.252 ± 0.039

4.105 ± 0.032

6.993 ± 0.045

5.018 ± 0.033

5.218 ± 0.04

7.387 ± 0.034

1.541 ± 0.018

2.545 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski