Candidatus Enterovibrio escacola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Enterovibrio

Average proteome isoelectric point is 7.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3193 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A5T0S9|A0A2A5T0S9_9GAMM Mobile element protein OS=Candidatus Enterovibrio escacola OX=1927127 GN=BTN49_2742 PE=4 SV=1
MM1 pKa = 8.19DD2 pKa = 5.91DD3 pKa = 4.12KK4 pKa = 11.54LYY6 pKa = 10.64LPVVIGVDD14 pKa = 3.07NTSYY18 pKa = 11.29KK19 pKa = 10.46EE20 pKa = 3.82VLAVVDD26 pKa = 5.15GYY28 pKa = 11.23RR29 pKa = 11.84EE30 pKa = 4.36SEE32 pKa = 4.4VSWLEE37 pKa = 3.74VLSQLTCQDD46 pKa = 3.33INISPP51 pKa = 3.88

Molecular weight: 5.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A5T542|A0A2A5T542_9GAMM RNA polymerase sigma factor RpoH OS=Candidatus Enterovibrio escacola OX=1927127 GN=rpoH PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 9.99GGRR28 pKa = 11.84RR29 pKa = 11.84VIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.14GRR39 pKa = 11.84KK40 pKa = 8.23QLSKK44 pKa = 11.23

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3193

0

3193

536259

37

1605

167.9

18.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.643 ± 0.052

1.328 ± 0.019

5.162 ± 0.038

5.76 ± 0.049

4.203 ± 0.036

6.372 ± 0.054

2.455 ± 0.025

7.498 ± 0.043

6.305 ± 0.048

10.303 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.07 ± 0.025

4.633 ± 0.033

3.531 ± 0.029

3.779 ± 0.034

5.254 ± 0.039

6.582 ± 0.044

5.499 ± 0.033

7.221 ± 0.043

1.159 ± 0.02

3.243 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski