Amino acid dipepetide frequency for Sclerotinia nivalis victorivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.523AlaAla: 12.523 ± 2.14
3.131AlaCys: 3.131 ± 0.347
1.252AlaAsp: 1.252 ± 0.038
3.757AlaGlu: 3.757 ± 0.995
4.383AlaPhe: 4.383 ± 1.192
7.514AlaGly: 7.514 ± 1.107
1.252AlaHis: 1.252 ± 0.92
5.636AlaIle: 5.636 ± 1.492
3.131AlaLys: 3.131 ± 1.229
16.281AlaLeu: 16.281 ± 0.488
0.626AlaMet: 0.626 ± 0.46
3.757AlaAsn: 3.757 ± 0.995
5.636AlaPro: 5.636 ± 1.492
1.879AlaGln: 1.879 ± 0.385
8.14AlaArg: 8.14 ± 0.197
13.776AlaSer: 13.776 ± 2.177
4.383AlaThr: 4.383 ± 0.572
3.757AlaVal: 3.757 ± 0.769
0.626AlaTrp: 0.626 ± 0.46
3.757AlaTyr: 3.757 ± 0.769
0.0AlaXaa: 0.0 ± 0.0
Cys
1.252CysAla: 1.252 ± 0.845
0.0CysCys: 0.0 ± 0.0
3.131CysAsp: 3.131 ± 0.347
0.0CysGlu: 0.0 ± 0.0
0.626CysPhe: 0.626 ± 0.422
0.626CysGly: 0.626 ± 0.46
0.626CysHis: 0.626 ± 0.422
0.0CysIle: 0.0 ± 0.0
0.626CysLys: 0.626 ± 0.422
0.626CysLeu: 0.626 ± 0.422
0.0CysMet: 0.0 ± 0.0
1.252CysAsn: 1.252 ± 0.845
0.626CysPro: 0.626 ± 0.422
0.0CysGln: 0.0 ± 0.0
1.252CysArg: 1.252 ± 0.845
0.0CysSer: 0.0 ± 0.0
1.252CysThr: 1.252 ± 0.038
1.879CysVal: 1.879 ± 1.267
0.626CysTrp: 0.626 ± 0.46
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.262AspAla: 6.262 ± 0.188
0.626AspCys: 0.626 ± 0.422
5.636AspAsp: 5.636 ± 1.492
3.131AspGlu: 3.131 ± 0.347
2.505AspPhe: 2.505 ± 0.075
3.131AspGly: 3.131 ± 0.535
0.626AspHis: 0.626 ± 0.422
4.383AspIle: 4.383 ± 0.31
1.252AspLys: 1.252 ± 0.845
3.757AspLeu: 3.757 ± 0.113
0.626AspMet: 0.626 ± 0.422
1.252AspAsn: 1.252 ± 0.92
5.009AspPro: 5.009 ± 1.032
1.252AspGln: 1.252 ± 0.038
1.879AspArg: 1.879 ± 0.497
6.262AspSer: 6.262 ± 0.188
3.757AspThr: 3.757 ± 0.995
3.131AspVal: 3.131 ± 1.417
0.626AspTrp: 0.626 ± 0.422
4.383AspTyr: 4.383 ± 2.074
0.0AspXaa: 0.0 ± 0.0
Glu
3.757GluAla: 3.757 ± 0.113
0.626GluCys: 0.626 ± 0.422
3.131GluAsp: 3.131 ± 1.417
0.626GluGlu: 0.626 ± 0.422
1.879GluPhe: 1.879 ± 0.497
5.009GluGly: 5.009 ± 1.914
1.252GluHis: 1.252 ± 0.92
1.252GluIle: 1.252 ± 0.038
0.626GluLys: 0.626 ± 0.422
3.757GluLeu: 3.757 ± 0.769
1.252GluMet: 1.252 ± 0.92
1.879GluAsn: 1.879 ± 0.385
2.505GluPro: 2.505 ± 0.957
0.0GluGln: 0.0 ± 0.0
2.505GluArg: 2.505 ± 0.807
0.626GluSer: 0.626 ± 0.422
0.626GluThr: 0.626 ± 0.422
1.879GluVal: 1.879 ± 0.497
0.0GluTrp: 0.0 ± 0.0
0.626GluTyr: 0.626 ± 0.422
0.0GluXaa: 0.0 ± 0.0
Phe
3.757PheAla: 3.757 ± 0.995
0.0PheCys: 0.0 ± 0.0
2.505PheAsp: 2.505 ± 0.075
1.252PheGlu: 1.252 ± 0.038
2.505PhePhe: 2.505 ± 0.957
3.131PheGly: 3.131 ± 0.347
0.0PheHis: 0.0 ± 0.0
1.879PheIle: 1.879 ± 0.385
0.626PheLys: 0.626 ± 0.422
3.131PheLeu: 3.131 ± 0.535
0.626PheMet: 0.626 ± 0.422
1.879PheAsn: 1.879 ± 0.385
2.505PhePro: 2.505 ± 0.807
0.0PheGln: 0.0 ± 0.0
1.879PheArg: 1.879 ± 0.385
6.888PheSer: 6.888 ± 1.53
1.252PheThr: 1.252 ± 0.038
5.009PheVal: 5.009 ± 0.732
0.626PheTrp: 0.626 ± 0.46
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
9.393GlyAla: 9.393 ± 0.723
1.879GlyCys: 1.879 ± 1.267
4.383GlyAsp: 4.383 ± 0.572
3.131GlyGlu: 3.131 ± 1.417
3.757GlyPhe: 3.757 ± 0.769
8.766GlyGly: 8.766 ± 2.909
2.505GlyHis: 2.505 ± 0.807
3.131GlyIle: 3.131 ± 0.347
1.252GlyLys: 1.252 ± 0.845
6.262GlyLeu: 6.262 ± 1.952
0.626GlyMet: 0.626 ± 0.422
4.383GlyAsn: 4.383 ± 0.572
5.009GlyPro: 5.009 ± 3.679
1.879GlyGln: 1.879 ± 0.497
7.514GlyArg: 7.514 ± 2.872
3.757GlySer: 3.757 ± 0.995
4.383GlyThr: 4.383 ± 0.31
4.383GlyVal: 4.383 ± 1.192
0.626GlyTrp: 0.626 ± 0.422
3.757GlyTyr: 3.757 ± 0.769
0.0GlyXaa: 0.0 ± 0.0
His
5.009HisAla: 5.009 ± 0.732
0.626HisCys: 0.626 ± 0.46
1.252HisAsp: 1.252 ± 0.038
1.879HisGlu: 1.879 ± 0.497
1.252HisPhe: 1.252 ± 0.845
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
1.252HisIle: 1.252 ± 0.038
0.626HisLys: 0.626 ± 0.46
1.879HisLeu: 1.879 ± 0.385
0.0HisMet: 0.0 ± 0.0
0.626HisAsn: 0.626 ± 0.422
0.626HisPro: 0.626 ± 0.46
1.879HisGln: 1.879 ± 1.379
1.879HisArg: 1.879 ± 0.385
1.252HisSer: 1.252 ± 0.845
1.252HisThr: 1.252 ± 0.038
1.252HisVal: 1.252 ± 0.92
0.626HisTrp: 0.626 ± 0.46
1.252HisTyr: 1.252 ± 0.92
0.0HisXaa: 0.0 ± 0.0
Ile
5.009IleAla: 5.009 ± 0.15
0.0IleCys: 0.0 ± 0.0
2.505IleAsp: 2.505 ± 1.689
3.131IleGlu: 3.131 ± 1.417
3.131IlePhe: 3.131 ± 1.229
4.383IleGly: 4.383 ± 0.31
1.252IleHis: 1.252 ± 0.92
1.879IleIle: 1.879 ± 0.497
0.626IleLys: 0.626 ± 0.422
5.009IleLeu: 5.009 ± 1.614
0.0IleMet: 0.0 ± 0.318
3.131IleAsn: 3.131 ± 1.229
5.009IlePro: 5.009 ± 1.914
0.626IleGln: 0.626 ± 0.46
3.131IleArg: 3.131 ± 1.229
3.757IleSer: 3.757 ± 0.769
1.879IleThr: 1.879 ± 0.497
1.879IleVal: 1.879 ± 1.379
0.0IleTrp: 0.0 ± 0.0
1.252IleTyr: 1.252 ± 0.038
0.0IleXaa: 0.0 ± 0.0
Lys
1.252LysAla: 1.252 ± 0.845
0.0LysCys: 0.0 ± 0.0
0.626LysAsp: 0.626 ± 0.422
0.626LysGlu: 0.626 ± 0.422
1.879LysPhe: 1.879 ± 1.379
1.879LysGly: 1.879 ± 0.385
1.879LysHis: 1.879 ± 0.385
0.626LysIle: 0.626 ± 0.422
1.252LysLys: 1.252 ± 0.038
1.879LysLeu: 1.879 ± 0.385
1.252LysMet: 1.252 ± 0.845
1.879LysAsn: 1.879 ± 0.385
0.0LysPro: 0.0 ± 0.0
0.626LysGln: 0.626 ± 0.422
3.131LysArg: 3.131 ± 2.111
3.131LysSer: 3.131 ± 1.229
0.626LysThr: 0.626 ± 0.422
1.879LysVal: 1.879 ± 0.385
0.0LysTrp: 0.0 ± 0.0
0.626LysTyr: 0.626 ± 0.422
0.0LysXaa: 0.0 ± 0.0
Leu
13.15LeuAla: 13.15 ± 0.835
1.879LeuCys: 1.879 ± 1.267
6.888LeuAsp: 6.888 ± 1.117
2.505LeuGlu: 2.505 ± 0.807
3.757LeuPhe: 3.757 ± 0.113
4.383LeuGly: 4.383 ± 0.572
3.757LeuHis: 3.757 ± 0.113
5.636LeuIle: 5.636 ± 2.036
2.505LeuLys: 2.505 ± 0.807
8.766LeuLeu: 8.766 ± 4.147
1.252LeuMet: 1.252 ± 0.845
3.757LeuAsn: 3.757 ± 1.651
6.888LeuPro: 6.888 ± 0.648
1.879LeuGln: 1.879 ± 1.267
8.14LeuArg: 8.14 ± 1.079
11.271LeuSer: 11.271 ± 0.544
5.636LeuThr: 5.636 ± 0.61
5.636LeuVal: 5.636 ± 0.272
1.252LeuTrp: 1.252 ± 0.038
1.252LeuTyr: 1.252 ± 0.038
0.0LeuXaa: 0.0 ± 0.0
Met
0.626MetAla: 0.626 ± 0.422
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
0.626MetPhe: 0.626 ± 0.422
0.626MetGly: 0.626 ± 0.422
0.0MetHis: 0.0 ± 0.0
1.252MetIle: 1.252 ± 0.038
0.626MetLys: 0.626 ± 0.422
1.252MetLeu: 1.252 ± 0.038
0.0MetMet: 0.0 ± 0.0
1.879MetAsn: 1.879 ± 1.267
0.626MetPro: 0.626 ± 0.46
0.626MetGln: 0.626 ± 0.422
0.0MetArg: 0.0 ± 0.0
1.252MetSer: 1.252 ± 0.845
1.879MetThr: 1.879 ± 0.497
1.252MetVal: 1.252 ± 0.845
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
5.009AsnAla: 5.009 ± 0.15
0.626AsnCys: 0.626 ± 0.422
3.131AsnAsp: 3.131 ± 1.417
0.626AsnGlu: 0.626 ± 0.46
0.626AsnPhe: 0.626 ± 0.46
3.757AsnGly: 3.757 ± 0.995
0.0AsnHis: 0.0 ± 0.0
3.131AsnIle: 3.131 ± 1.229
0.0AsnLys: 0.0 ± 0.0
1.879AsnLeu: 1.879 ± 1.267
1.879AsnMet: 1.879 ± 0.385
0.626AsnAsn: 0.626 ± 0.422
4.383AsnPro: 4.383 ± 0.572
0.626AsnGln: 0.626 ± 0.46
3.131AsnArg: 3.131 ± 1.229
6.262AsnSer: 6.262 ± 0.188
3.131AsnThr: 3.131 ± 0.347
3.131AsnVal: 3.131 ± 1.229
1.252AsnTrp: 1.252 ± 0.845
0.626AsnTyr: 0.626 ± 0.422
0.0AsnXaa: 0.0 ± 0.0
Pro
9.393ProAla: 9.393 ± 5.133
0.626ProCys: 0.626 ± 0.46
3.757ProAsp: 3.757 ± 1.651
1.252ProGlu: 1.252 ± 0.92
3.131ProPhe: 3.131 ± 0.347
6.888ProGly: 6.888 ± 4.176
0.626ProHis: 0.626 ± 0.46
1.879ProIle: 1.879 ± 1.379
1.879ProLys: 1.879 ± 0.385
3.757ProLeu: 3.757 ± 0.769
0.0ProMet: 0.0 ± 0.0
3.131ProAsn: 3.131 ± 1.417
4.383ProPro: 4.383 ± 3.219
1.879ProGln: 1.879 ± 0.497
2.505ProArg: 2.505 ± 1.839
1.252ProSer: 1.252 ± 0.845
6.888ProThr: 6.888 ± 3.294
7.514ProVal: 7.514 ± 0.657
1.252ProTrp: 1.252 ± 0.92
1.252ProTyr: 1.252 ± 0.038
0.0ProXaa: 0.0 ± 0.0
Gln
1.252GlnAla: 1.252 ± 0.038
0.626GlnCys: 0.626 ± 0.422
1.252GlnAsp: 1.252 ± 0.845
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
2.505GlnGly: 2.505 ± 0.075
1.252GlnHis: 1.252 ± 0.038
1.879GlnIle: 1.879 ± 0.497
0.0GlnLys: 0.0 ± 0.0
1.879GlnLeu: 1.879 ± 1.379
0.0GlnMet: 0.0 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
1.879GlnPro: 1.879 ± 1.379
0.626GlnGln: 0.626 ± 0.46
1.252GlnArg: 1.252 ± 0.845
1.879GlnSer: 1.879 ± 0.385
1.252GlnThr: 1.252 ± 0.845
1.879GlnVal: 1.879 ± 0.497
0.0GlnTrp: 0.0 ± 0.0
0.626GlnTyr: 0.626 ± 0.422
0.0GlnXaa: 0.0 ± 0.0
Arg
9.393ArgAla: 9.393 ± 1.605
2.505ArgCys: 2.505 ± 0.807
3.757ArgAsp: 3.757 ± 0.113
3.757ArgGlu: 3.757 ± 1.651
0.0ArgPhe: 0.0 ± 0.0
7.514ArgGly: 7.514 ± 0.657
2.505ArgHis: 2.505 ± 0.957
1.252ArgIle: 1.252 ± 0.92
0.0ArgLys: 0.0 ± 0.0
6.888ArgLeu: 6.888 ± 1.117
1.879ArgMet: 1.879 ± 1.267
3.131ArgAsn: 3.131 ± 0.535
3.757ArgPro: 3.757 ± 1.877
1.252ArgGln: 1.252 ± 0.92
2.505ArgArg: 2.505 ± 0.075
5.636ArgSer: 5.636 ± 0.272
5.009ArgThr: 5.009 ± 0.15
5.009ArgVal: 5.009 ± 2.496
1.879ArgTrp: 1.879 ± 0.385
2.505ArgTyr: 2.505 ± 0.075
0.0ArgXaa: 0.0 ± 0.0
Ser
8.766SerAla: 8.766 ± 2.383
0.626SerCys: 0.626 ± 0.422
5.009SerAsp: 5.009 ± 0.15
3.131SerGlu: 3.131 ± 1.229
1.879SerPhe: 1.879 ± 0.497
6.262SerGly: 6.262 ± 1.576
2.505SerHis: 2.505 ± 0.075
5.636SerIle: 5.636 ± 1.154
6.262SerLys: 6.262 ± 1.576
13.15SerLeu: 13.15 ± 3.575
0.0SerMet: 0.0 ± 0.0
1.879SerAsn: 1.879 ± 0.497
3.131SerPro: 3.131 ± 0.535
2.505SerGln: 2.505 ± 0.807
5.636SerArg: 5.636 ± 2.374
9.393SerSer: 9.393 ± 1.605
3.757SerThr: 3.757 ± 1.877
6.888SerVal: 6.888 ± 1.53
1.252SerTrp: 1.252 ± 0.845
4.383SerTyr: 4.383 ± 0.31
0.0SerXaa: 0.0 ± 0.0
Thr
5.009ThrAla: 5.009 ± 1.914
0.0ThrCys: 0.0 ± 0.0
4.383ThrAsp: 4.383 ± 3.219
0.0ThrGlu: 0.0 ± 0.0
3.131ThrPhe: 3.131 ± 0.535
0.626ThrGly: 0.626 ± 0.46
2.505ThrHis: 2.505 ± 0.075
1.252ThrIle: 1.252 ± 0.038
1.252ThrLys: 1.252 ± 0.845
8.766ThrLeu: 8.766 ± 1.501
0.626ThrMet: 0.626 ± 0.305
3.131ThrAsn: 3.131 ± 0.347
4.383ThrPro: 4.383 ± 0.572
0.626ThrGln: 0.626 ± 0.422
7.514ThrArg: 7.514 ± 1.107
5.009ThrSer: 5.009 ± 0.732
6.888ThrThr: 6.888 ± 1.117
3.757ThrVal: 3.757 ± 1.877
0.626ThrTrp: 0.626 ± 0.422
1.252ThrTyr: 1.252 ± 0.92
0.0ThrXaa: 0.0 ± 0.0
Val
2.505ValAla: 2.505 ± 0.075
0.0ValCys: 0.0 ± 0.0
3.757ValAsp: 3.757 ± 0.113
3.757ValGlu: 3.757 ± 0.995
1.879ValPhe: 1.879 ± 1.379
9.393ValGly: 9.393 ± 0.159
0.626ValHis: 0.626 ± 0.422
3.131ValIle: 3.131 ± 0.347
1.252ValLys: 1.252 ± 0.038
5.636ValLeu: 5.636 ± 0.272
0.626ValMet: 0.626 ± 0.422
5.009ValAsn: 5.009 ± 0.15
5.009ValPro: 5.009 ± 1.032
1.252ValGln: 1.252 ± 0.038
4.383ValArg: 4.383 ± 0.572
7.514ValSer: 7.514 ± 2.421
3.757ValThr: 3.757 ± 0.769
2.505ValVal: 2.505 ± 0.807
0.626ValTrp: 0.626 ± 0.422
1.879ValTyr: 1.879 ± 1.267
0.0ValXaa: 0.0 ± 0.0
Trp
0.626TrpAla: 0.626 ± 0.422
0.626TrpCys: 0.626 ± 0.422
1.252TrpAsp: 1.252 ± 0.845
0.626TrpGlu: 0.626 ± 0.46
1.252TrpPhe: 1.252 ± 0.92
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.626TrpIle: 0.626 ± 0.46
0.0TrpLys: 0.0 ± 0.0
2.505TrpLeu: 2.505 ± 0.075
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.626TrpArg: 0.626 ± 0.422
1.252TrpSer: 1.252 ± 0.845
1.252TrpThr: 1.252 ± 0.92
0.626TrpVal: 0.626 ± 0.422
0.626TrpTrp: 0.626 ± 0.422
0.626TrpTyr: 0.626 ± 0.422
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.252TyrAla: 1.252 ± 0.038
0.0TyrCys: 0.0 ± 0.0
1.879TyrAsp: 1.879 ± 0.497
0.626TyrGlu: 0.626 ± 0.46
1.252TyrPhe: 1.252 ± 0.845
4.383TyrGly: 4.383 ± 0.31
1.252TyrHis: 1.252 ± 0.038
2.505TyrIle: 2.505 ± 0.075
1.252TyrLys: 1.252 ± 0.038
3.131TyrLeu: 3.131 ± 1.229
0.626TyrMet: 0.626 ± 0.422
1.252TyrAsn: 1.252 ± 0.845
1.879TyrPro: 1.879 ± 0.497
0.626TyrGln: 0.626 ± 0.422
3.131TyrArg: 3.131 ± 1.229
1.879TyrSer: 1.879 ± 1.267
1.879TyrThr: 1.879 ± 0.385
1.252TyrVal: 1.252 ± 0.038
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1598 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski