Planomicrobium glaciei

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3811 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G7Z4E4|A0A1G7Z4E4_9BACL Indole-3-glycerol phosphate synthase OS=Planomicrobium glaciei OX=459472 GN=trpC PE=3 SV=1
MM1 pKa = 7.53EE2 pKa = 5.77LFGFPMEE9 pKa = 4.2QVYY12 pKa = 10.51LYY14 pKa = 9.93TLVAAGALTVLYY26 pKa = 10.91VLFADD31 pKa = 4.63IADD34 pKa = 4.55AGDD37 pKa = 3.83GLPFFNPAVILAFVTLLAAAGYY59 pKa = 9.1VLEE62 pKa = 4.97LATSLSDD69 pKa = 4.26LAILGIAAVAAVVLDD84 pKa = 3.12ILLYY88 pKa = 10.4FFVLLPLSSAEE99 pKa = 3.83SSIAYY104 pKa = 8.77TEE106 pKa = 4.17EE107 pKa = 4.05SLLGQVAKK115 pKa = 10.65VIVPIPVDD123 pKa = 3.78GYY125 pKa = 9.99GEE127 pKa = 4.39VVIEE131 pKa = 4.61TYY133 pKa = 11.15GGMISKK139 pKa = 10.26RR140 pKa = 11.84AAGFDD145 pKa = 3.59NEE147 pKa = 5.79AIGQDD152 pKa = 3.32RR153 pKa = 11.84QVLIIQVNDD162 pKa = 3.23GTLYY166 pKa = 10.41VRR168 pKa = 11.84DD169 pKa = 4.03YY170 pKa = 11.18EE171 pKa = 4.98PIFSTEE177 pKa = 3.38KK178 pKa = 10.63RR179 pKa = 11.84II180 pKa = 4.01

Molecular weight: 19.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G8K176|A0A1G8K176_9BACL Uncharacterized protein OS=Planomicrobium glaciei OX=459472 GN=SAMN04487975_11596 PE=4 SV=1
MM1 pKa = 7.64LYY3 pKa = 9.48IHH5 pKa = 7.32CSPSIWSKK13 pKa = 10.1PAEE16 pKa = 4.19KK17 pKa = 9.79TLLLLQCCAIRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.37DD31 pKa = 3.64LASQASANVLPAGQRR46 pKa = 11.84KK47 pKa = 9.0RR48 pKa = 11.84RR49 pKa = 11.84DD50 pKa = 3.13SRR52 pKa = 11.84DD53 pKa = 3.14PARR56 pKa = 11.84RR57 pKa = 11.84TAAEE61 pKa = 4.02EE62 pKa = 3.51AWRR65 pKa = 11.84IARR68 pKa = 11.84GKK70 pKa = 10.12RR71 pKa = 11.84SWFAEE76 pKa = 3.87YY77 pKa = 10.54RR78 pKa = 3.64

Molecular weight: 9.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3811

0

3811

1129360

39

1605

296.3

33.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.425 ± 0.044

0.6 ± 0.01

5.094 ± 0.029

7.821 ± 0.047

4.613 ± 0.031

7.272 ± 0.04

2.038 ± 0.021

7.064 ± 0.04

6.124 ± 0.036

9.855 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.873 ± 0.02

3.835 ± 0.026

3.832 ± 0.021

3.694 ± 0.027

4.193 ± 0.029

5.825 ± 0.029

5.318 ± 0.023

7.147 ± 0.031

1.057 ± 0.014

3.318 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski