Promicromonospora thailandica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae; Promicromonospora

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5167 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A397LR42|A0A397LR42_9MICO 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) OS=Promicromonospora thailandica OX=765201 GN=C7338_3333 PE=4 SV=1
MM1 pKa = 7.48RR2 pKa = 11.84QQLSRR7 pKa = 11.84LLAGLAVSALVALPLASTGAVAAEE31 pKa = 3.95PAEE34 pKa = 4.37EE35 pKa = 5.57GVTAWSPPAKK45 pKa = 10.0SAPKK49 pKa = 10.17DD50 pKa = 3.58RR51 pKa = 11.84APARR55 pKa = 11.84ADD57 pKa = 3.39GATTAAAEE65 pKa = 4.32VADD68 pKa = 5.49QVLTWTADD76 pKa = 3.4GGVSEE81 pKa = 4.82YY82 pKa = 11.39ASAPATATAGATTIVFEE99 pKa = 4.26NSRR102 pKa = 11.84ATGNNIAMSHH112 pKa = 5.77TLTFDD117 pKa = 3.08TSTPGYY123 pKa = 9.43NHH125 pKa = 7.54DD126 pKa = 3.71VTLDD130 pKa = 3.35ILANPLDD137 pKa = 4.49ANGGRR142 pKa = 11.84YY143 pKa = 7.6EE144 pKa = 4.31AEE146 pKa = 4.1VVLTPGTYY154 pKa = 9.31RR155 pKa = 11.84YY156 pKa = 9.34FCAIPGHH163 pKa = 4.92STMVGEE169 pKa = 4.47LVVTEE174 pKa = 4.69GPGEE178 pKa = 4.2DD179 pKa = 3.06TTAPVVTPQVAGQQDD194 pKa = 3.57GTGAYY199 pKa = 9.17IGTATVSLAAEE210 pKa = 4.38DD211 pKa = 5.25DD212 pKa = 3.65ISGVASVEE220 pKa = 4.0YY221 pKa = 10.55ALDD224 pKa = 3.83GGEE227 pKa = 3.88FAPYY231 pKa = 10.23GEE233 pKa = 4.39PVVLDD238 pKa = 3.73EE239 pKa = 5.17PGTYY243 pKa = 10.43SLAYY247 pKa = 9.98RR248 pKa = 11.84ATDD251 pKa = 3.16NAGNVSEE258 pKa = 5.23PGTLDD263 pKa = 3.34VTVVSADD270 pKa = 3.93GEE272 pKa = 4.52DD273 pKa = 3.52TTAPTVTAEE282 pKa = 4.19VTGEE286 pKa = 4.0LDD288 pKa = 4.18DD289 pKa = 5.33DD290 pKa = 4.2GAYY293 pKa = 10.69VGTATVNLAALDD305 pKa = 4.15AGSGVASVEE314 pKa = 3.8YY315 pKa = 10.71DD316 pKa = 3.3LDD318 pKa = 3.98GAGYY322 pKa = 10.01AAYY325 pKa = 8.39TDD327 pKa = 4.24PVAVDD332 pKa = 3.43TPGEE336 pKa = 4.07HH337 pKa = 5.37TVTYY341 pKa = 10.37RR342 pKa = 11.84ATDD345 pKa = 3.24NAGNVSEE352 pKa = 4.97PGSATFTVVEE362 pKa = 4.71PSQEE366 pKa = 4.08DD367 pKa = 3.84TTPPTVTAHH376 pKa = 6.51VMGEE380 pKa = 3.9QDD382 pKa = 2.94GDD384 pKa = 3.65GAYY387 pKa = 10.32VGSATVHH394 pKa = 6.28LVAEE398 pKa = 4.79DD399 pKa = 3.59EE400 pKa = 4.4ASEE403 pKa = 4.41VTSVEE408 pKa = 3.78YY409 pKa = 10.97DD410 pKa = 3.16LDD412 pKa = 4.05GAGWTDD418 pKa = 3.23YY419 pKa = 11.28GDD421 pKa = 3.83PVLVDD426 pKa = 3.03VTGSHH431 pKa = 6.04TLTYY435 pKa = 10.35RR436 pKa = 11.84ATDD439 pKa = 3.28AAGNTSEE446 pKa = 4.59PGSVEE451 pKa = 3.66IVVVGGADD459 pKa = 3.71PPDD462 pKa = 3.93TTPPIASAQVDD473 pKa = 4.09GDD475 pKa = 3.48QDD477 pKa = 3.85DD478 pKa = 4.06YY479 pKa = 12.07GVYY482 pKa = 10.71LEE484 pKa = 4.52VATVSISARR493 pKa = 11.84DD494 pKa = 3.91DD495 pKa = 3.52EE496 pKa = 5.08SGVAFVEE503 pKa = 4.35WALGDD508 pKa = 3.66TAFRR512 pKa = 11.84EE513 pKa = 4.27YY514 pKa = 10.4TGPFDD519 pKa = 3.65VTDD522 pKa = 4.84PGAHH526 pKa = 6.68ALTYY530 pKa = 10.38RR531 pKa = 11.84ATDD534 pKa = 3.13NAGNVTRR541 pKa = 11.84TGTLRR546 pKa = 11.84FSVSRR551 pKa = 11.84STIDD555 pKa = 3.01ACPVSDD561 pKa = 4.4EE562 pKa = 4.48RR563 pKa = 11.84PTVILGNIDD572 pKa = 3.84SKK574 pKa = 9.75VTNYY578 pKa = 10.95DD579 pKa = 3.24SGNGCTVADD588 pKa = 5.69LIDD591 pKa = 5.16ADD593 pKa = 4.42GAWVSHH599 pKa = 5.66NAFVLHH605 pKa = 6.02VNQVADD611 pKa = 4.27RR612 pKa = 11.84LDD614 pKa = 3.92DD615 pKa = 4.55ADD617 pKa = 4.59VITATEE623 pKa = 3.9ATRR626 pKa = 11.84LIRR629 pKa = 11.84AARR632 pKa = 11.84QSDD635 pKa = 3.71VGRR638 pKa = 4.31

Molecular weight: 65.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A397LHD0|A0A397LHD0_9MICO Uncharacterized protein OS=Promicromonospora thailandica OX=765201 GN=C7338_0228 PE=4 SV=1
MM1 pKa = 6.92GTGAAGTTALAAEE14 pKa = 4.45RR15 pKa = 11.84DD16 pKa = 3.97GTTTTVRR23 pKa = 11.84AGPSTGTTVRR33 pKa = 11.84AGTTGPAGTTGLVATTGPAGRR54 pKa = 11.84VAGVSGRR61 pKa = 11.84SGVVTTAGVRR71 pKa = 11.84TVRR74 pKa = 11.84AVRR77 pKa = 11.84TASGATAARR86 pKa = 11.84VTEE89 pKa = 4.05ATAARR94 pKa = 11.84GATGRR99 pKa = 11.84SGGTTATGRR108 pKa = 11.84AGRR111 pKa = 11.84TRR113 pKa = 11.84TGTAAVRR120 pKa = 11.84GVRR123 pKa = 11.84RR124 pKa = 11.84GTTTTGRR131 pKa = 11.84VGRR134 pKa = 11.84SVTGMTGRR142 pKa = 11.84VGRR145 pKa = 11.84SRR147 pKa = 11.84SVAGTVRR154 pKa = 11.84GVTTGWVTGRR164 pKa = 11.84SVVVTTRR171 pKa = 11.84PGARR175 pKa = 11.84TVTAAIVRR183 pKa = 11.84GGPSTVMTGRR193 pKa = 11.84AGPSRR198 pKa = 11.84TVAGIGRR205 pKa = 11.84GVTTGWVTGRR215 pKa = 11.84SGGAVTTVPAVRR227 pKa = 11.84SVTATTGRR235 pKa = 11.84AGRR238 pKa = 11.84SRR240 pKa = 11.84TAVGIGRR247 pKa = 11.84AATTAGARR255 pKa = 11.84SGGVVRR261 pKa = 11.84TGRR264 pKa = 11.84GVRR267 pKa = 11.84STTVATGRR275 pKa = 11.84AARR278 pKa = 11.84TGRR281 pKa = 11.84TAPGVPSVIGVTVRR295 pKa = 11.84AGRR298 pKa = 11.84SRR300 pKa = 11.84SVAGIGRR307 pKa = 11.84GVMTGWVTGRR317 pKa = 11.84SVVVATRR324 pKa = 11.84RR325 pKa = 11.84GVRR328 pKa = 11.84TVTAAIVRR336 pKa = 11.84GGPSTVMTGRR346 pKa = 11.84AGRR349 pKa = 11.84SRR351 pKa = 11.84SVAGIGRR358 pKa = 11.84GVMTAGARR366 pKa = 11.84SEE368 pKa = 4.47GAVTTVPAVRR378 pKa = 11.84SRR380 pKa = 11.84TVATGCAATTVGFRR394 pKa = 11.84SGGTTAVATGASSAGATVLPATATSVGGTSVAGTSGRR431 pKa = 11.84RR432 pKa = 11.84ASRR435 pKa = 11.84NRR437 pKa = 11.84RR438 pKa = 11.84SPRR441 pKa = 11.84TPRR444 pKa = 11.84SVSSTGRR451 pKa = 11.84HH452 pKa = 5.18GLACGAA458 pKa = 4.4

Molecular weight: 44.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5167

0

5167

1812030

30

2269

350.7

37.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.331 ± 0.052

0.519 ± 0.008

6.461 ± 0.031

5.475 ± 0.028

2.631 ± 0.018

9.799 ± 0.034

2.043 ± 0.016

2.932 ± 0.021

1.448 ± 0.021

10.066 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.585 ± 0.013

1.623 ± 0.017

6.135 ± 0.027

2.619 ± 0.018

7.671 ± 0.04

4.93 ± 0.022

6.473 ± 0.032

9.69 ± 0.037

1.609 ± 0.017

1.959 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski