Prevotella micans F0438

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella micans

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2058 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|H1Q3Q5|H1Q3Q5_9BACT 30S ribosomal protein S21 OS=Prevotella micans F0438 OX=883158 GN=rpsU PE=3 SV=1
MM1 pKa = 6.31NQKK4 pKa = 9.43YY5 pKa = 9.23VCDD8 pKa = 3.79VCGWVYY14 pKa = 11.2DD15 pKa = 4.2PAVGDD20 pKa = 3.94PDD22 pKa = 4.21NGIEE26 pKa = 4.59PGTPFDD32 pKa = 5.06KK33 pKa = 11.11LPEE36 pKa = 4.3DD37 pKa = 4.06WVCPEE42 pKa = 4.19CGVGKK47 pKa = 10.38SEE49 pKa = 4.94FSPLEE54 pKa = 4.05DD55 pKa = 3.19

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H1Q3H1|H1Q3H1_9BACT ATP synthase subunit delta OS=Prevotella micans F0438 OX=883158 GN=atpH PE=3 SV=1
MM1 pKa = 7.85PNGKK5 pKa = 9.19KK6 pKa = 10.25KK7 pKa = 10.12KK8 pKa = 7.0GHH10 pKa = 6.14KK11 pKa = 9.06MATHH15 pKa = 6.13KK16 pKa = 10.39RR17 pKa = 11.84KK18 pKa = 9.84KK19 pKa = 9.28RR20 pKa = 11.84LRR22 pKa = 11.84KK23 pKa = 9.25NRR25 pKa = 11.84HH26 pKa = 4.69KK27 pKa = 11.1SKK29 pKa = 11.1

Molecular weight: 3.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2058

0

2058

708508

29

2518

344.3

38.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.138 ± 0.051

1.168 ± 0.021

5.451 ± 0.037

6.16 ± 0.061

4.542 ± 0.035

6.714 ± 0.052

2.036 ± 0.024

7.232 ± 0.047

6.422 ± 0.054

8.786 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.703 ± 0.026

5.402 ± 0.047

3.868 ± 0.03

3.627 ± 0.034

5.175 ± 0.043

6.25 ± 0.043

6.0 ± 0.044

6.151 ± 0.044

1.15 ± 0.02

4.025 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski