Granulicella pectinivorans

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Granulicella

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4259 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I6L8V8|A0A1I6L8V8_9BACT Quinolinate phosphoribosyltransferase [decarboxylating] OS=Granulicella pectinivorans OX=474950 GN=SAMN05421771_0428 PE=3 SV=1
MM1 pKa = 7.51PEE3 pKa = 4.05EE4 pKa = 4.21VRR6 pKa = 11.84STTANQLVILFEE18 pKa = 4.37GSWFFIQDD26 pKa = 3.68PEE28 pKa = 4.46DD29 pKa = 3.39STRR32 pKa = 11.84ILALCPYY39 pKa = 9.83VDD41 pKa = 5.48APDD44 pKa = 3.72HH45 pKa = 5.78VCWFGFWDD53 pKa = 4.68GSSIAGPNATGPNGAMQEE71 pKa = 4.4GEE73 pKa = 4.61SLWVDD78 pKa = 4.16VITDD82 pKa = 3.58QAKK85 pKa = 8.38NTAPVDD91 pKa = 3.75ALFQAAQAAYY101 pKa = 9.58SFPYY105 pKa = 8.98LTSSDD110 pKa = 4.01PATSPLQLTDD120 pKa = 3.28TTGMRR125 pKa = 11.84RR126 pKa = 11.84VSISMPDD133 pKa = 3.16SMRR136 pKa = 11.84ADD138 pKa = 3.34GLLTNATVYY147 pKa = 10.75GSQNPGSTIKK157 pKa = 10.72LDD159 pKa = 3.73AGSSYY164 pKa = 11.5VDD166 pKa = 3.73FLFVYY171 pKa = 10.66YY172 pKa = 10.55YY173 pKa = 8.81DD174 pKa = 3.88TQADD178 pKa = 3.72VAMGTQFFEE187 pKa = 4.35QPVFSTSLATVVPHH201 pKa = 7.24LIFKK205 pKa = 10.75VMGTAADD212 pKa = 3.91AQDD215 pKa = 3.3MASEE219 pKa = 4.42YY220 pKa = 9.35THH222 pKa = 7.11LVQTFDD228 pKa = 3.88SLRR231 pKa = 11.84QMVFSPDD238 pKa = 4.39GICCDD243 pKa = 3.31VAIYY247 pKa = 10.28PEE249 pKa = 4.62AGQRR253 pKa = 11.84LQFEE257 pKa = 4.37ILDD260 pKa = 3.96PSFSAAEE267 pKa = 4.05LGIPSQQLGGLRR279 pKa = 11.84IRR281 pKa = 11.84DD282 pKa = 3.91YY283 pKa = 11.15ASCAAGPFAASGVLGGG299 pKa = 4.3

Molecular weight: 32.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I6LHL1|A0A1I6LHL1_9BACT Uncharacterized protein OS=Granulicella pectinivorans OX=474950 GN=SAMN05421771_0711 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.02RR4 pKa = 11.84TFQPNRR10 pKa = 11.84RR11 pKa = 11.84HH12 pKa = 5.69RR13 pKa = 11.84AKK15 pKa = 9.55THH17 pKa = 5.47GFLTRR22 pKa = 11.84MKK24 pKa = 9.03TKK26 pKa = 10.57AGAAVLSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.19GRR40 pKa = 11.84HH41 pKa = 5.72KK42 pKa = 10.29IAVSAGFRR50 pKa = 11.84DD51 pKa = 3.66

Molecular weight: 5.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4259

0

4259

1581086

29

2642

371.2

40.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.182 ± 0.041

0.831 ± 0.011

4.992 ± 0.029

5.155 ± 0.047

3.918 ± 0.026

8.248 ± 0.045

2.267 ± 0.019

4.966 ± 0.03

3.691 ± 0.032

9.989 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.38 ± 0.019

3.274 ± 0.036

5.456 ± 0.026

3.645 ± 0.029

5.867 ± 0.043

6.121 ± 0.039

6.562 ± 0.056

7.363 ± 0.031

1.325 ± 0.016

2.768 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski