Panax notoginseng virus A

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; unclassified Totiviridae

Average proteome isoelectric point is 6.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A0U4DRM0|A0A0U4DRM0_9VIRU RNA-directed RNA polymerase OS=Panax notoginseng virus A OX=1777016 PE=3 SV=1
MM1 pKa = 8.04DD2 pKa = 3.91SFVRR6 pKa = 11.84QFFPDD11 pKa = 4.24FNSPGVDD18 pKa = 4.0FNFDD22 pKa = 3.6SDD24 pKa = 4.69LKK26 pKa = 7.94THH28 pKa = 6.63TYY30 pKa = 8.2MGCGLRR36 pKa = 11.84VYY38 pKa = 10.42DD39 pKa = 4.36GHH41 pKa = 8.14IDD43 pKa = 3.7QNRR46 pKa = 11.84HH47 pKa = 3.72FHH49 pKa = 6.26SFQPMTPLGHH59 pKa = 6.54YY60 pKa = 10.12DD61 pKa = 3.51CEE63 pKa = 4.44FTGGSTSLDD72 pKa = 3.31GLTKK76 pKa = 10.67NYY78 pKa = 7.4LTPEE82 pKa = 4.08GTVDD86 pKa = 3.67LTALADD92 pKa = 3.9TLKK95 pKa = 10.99GSAGLQTALLSAHH108 pKa = 6.1VSHH111 pKa = 6.65MLHH114 pKa = 6.67WSWADD119 pKa = 3.08NHH121 pKa = 6.02VALLFNMFRR130 pKa = 11.84YY131 pKa = 10.57VMIEE135 pKa = 4.39RR136 pKa = 11.84IRR138 pKa = 11.84EE139 pKa = 3.93AAGSLVGKK147 pKa = 10.32LGLYY151 pKa = 10.14EE152 pKa = 5.19DD153 pKa = 3.88GHH155 pKa = 8.41IGIDD159 pKa = 3.35MDD161 pKa = 4.12QFWKK165 pKa = 10.6EE166 pKa = 4.19SYY168 pKa = 10.55PEE170 pKa = 4.55DD171 pKa = 4.51GGDD174 pKa = 3.54RR175 pKa = 11.84CWPGGGDD182 pKa = 3.57DD183 pKa = 5.7LSYY186 pKa = 10.91PDD188 pKa = 4.96YY189 pKa = 11.07IRR191 pKa = 11.84LTATTPSTGDD201 pKa = 2.83WALDD205 pKa = 3.48LRR207 pKa = 11.84GMSARR212 pKa = 11.84DD213 pKa = 3.39ARR215 pKa = 11.84FVLLMLGSWKK225 pKa = 9.98RR226 pKa = 11.84RR227 pKa = 11.84SRR229 pKa = 11.84LRR231 pKa = 11.84LDD233 pKa = 3.53CSTPRR238 pKa = 11.84LCDD241 pKa = 3.21NVLYY245 pKa = 10.27RR246 pKa = 11.84SSVEE250 pKa = 3.85VTNITDD256 pKa = 4.42WISDD260 pKa = 3.67KK261 pKa = 11.21DD262 pKa = 3.66KK263 pKa = 10.81QAPPRR268 pKa = 11.84TLSSSEE274 pKa = 3.19AWRR277 pKa = 11.84ALKK280 pKa = 10.58LYY282 pKa = 7.81VTQNRR287 pKa = 11.84LYY289 pKa = 10.65DD290 pKa = 3.75HH291 pKa = 7.15FSATLYY297 pKa = 9.95TISTMMYY304 pKa = 8.84QFVPATAEE312 pKa = 3.87ATNWLSLHH320 pKa = 4.97WTVNIPTFRR329 pKa = 11.84AVRR332 pKa = 11.84GRR334 pKa = 11.84YY335 pKa = 8.4EE336 pKa = 3.74FLNEE340 pKa = 3.86GEE342 pKa = 4.42AALLSHH348 pKa = 7.25RR349 pKa = 11.84SLNEE353 pKa = 3.09WGYY356 pKa = 10.98INGKK360 pKa = 8.13LEE362 pKa = 4.17KK363 pKa = 9.75VNLMALVFSQAYY375 pKa = 6.63HH376 pKa = 6.12TGLAVRR382 pKa = 11.84GVRR385 pKa = 11.84KK386 pKa = 9.88GLEE389 pKa = 3.79LHH391 pKa = 6.81PNDD394 pKa = 3.89VFASEE399 pKa = 3.82IDD401 pKa = 4.06FYY403 pKa = 11.37TSANFISAAASEE415 pKa = 4.55ATRR418 pKa = 11.84TDD420 pKa = 3.11TPLPGMVGIHH430 pKa = 6.25FVTDD434 pKa = 4.09DD435 pKa = 4.56DD436 pKa = 5.02FDD438 pKa = 3.79MYY440 pKa = 11.58NDD442 pKa = 3.52DD443 pKa = 4.06RR444 pKa = 11.84KK445 pKa = 10.93VEE447 pKa = 4.06TRR449 pKa = 11.84EE450 pKa = 3.93NDD452 pKa = 3.77DD453 pKa = 4.06EE454 pKa = 5.68LLDD457 pKa = 5.2DD458 pKa = 3.95YY459 pKa = 10.29HH460 pKa = 7.36TSISKK465 pKa = 10.57VGLKK469 pKa = 10.26KK470 pKa = 10.29GTTILVDD477 pKa = 3.17IADD480 pKa = 3.79TRR482 pKa = 11.84LEE484 pKa = 4.46KK485 pKa = 10.35VTLDD489 pKa = 3.38QVKK492 pKa = 10.49KK493 pKa = 10.54KK494 pKa = 10.3IRR496 pKa = 11.84TLTIGANAKK505 pKa = 10.47LKK507 pKa = 10.46DD508 pKa = 3.88DD509 pKa = 4.52PEE511 pKa = 5.8FEE513 pKa = 4.33LTEE516 pKa = 4.18EE517 pKa = 4.26EE518 pKa = 4.42SMAMEE523 pKa = 4.35GKK525 pKa = 9.74MYY527 pKa = 10.8VSLSADD533 pKa = 3.31EE534 pKa = 5.07DD535 pKa = 3.93DD536 pKa = 3.86VRR538 pKa = 11.84EE539 pKa = 4.13DD540 pKa = 3.18RR541 pKa = 11.84VFVHH545 pKa = 5.87MPWYY549 pKa = 9.19TFAGVPTMILPLSPFPYY566 pKa = 8.96NTPFNMKK573 pKa = 8.87GTISPEE579 pKa = 3.65LGKK582 pKa = 9.49MDD584 pKa = 3.14RR585 pKa = 11.84RR586 pKa = 11.84GFRR589 pKa = 11.84LMSRR593 pKa = 11.84NAWEE597 pKa = 3.9IANLLRR603 pKa = 11.84LCGYY607 pKa = 8.28DD608 pKa = 2.96ARR610 pKa = 11.84MRR612 pKa = 11.84DD613 pKa = 3.36GGEE616 pKa = 3.49IAGAGTYY623 pKa = 7.78FAPNDD628 pKa = 3.92ANMVWPVMQVPDD640 pKa = 4.16AQDD643 pKa = 3.59DD644 pKa = 4.11DD645 pKa = 5.4VILTGQIDD653 pKa = 3.9RR654 pKa = 11.84EE655 pKa = 4.38VQFIDD660 pKa = 4.61LPPVYY665 pKa = 10.71NRR667 pKa = 11.84FFTGKK672 pKa = 9.77KK673 pKa = 8.26IEE675 pKa = 4.07YY676 pKa = 9.79SITVLKK682 pKa = 10.67RR683 pKa = 11.84GTATSFTDD691 pKa = 3.06NRR693 pKa = 11.84KK694 pKa = 9.76DD695 pKa = 3.4VAEE698 pKa = 4.08WGGPVTLTRR707 pKa = 11.84EE708 pKa = 4.01VTVTYY713 pKa = 8.66EE714 pKa = 4.03VPEE717 pKa = 4.25SVSRR721 pKa = 11.84LRR723 pKa = 11.84AYY725 pKa = 9.86ISRR728 pKa = 11.84NEE730 pKa = 3.91SGFRR734 pKa = 11.84FVDD737 pKa = 3.4NAPAGVIPMLEE748 pKa = 4.0RR749 pKa = 11.84EE750 pKa = 3.97IDD752 pKa = 3.64VQGVVEE758 pKa = 4.4DD759 pKa = 3.82

Molecular weight:
85.79 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A0U4DRM0|A0A0U4DRM0_9VIRU RNA-directed RNA polymerase OS=Panax notoginseng virus A OX=1777016 PE=3 SV=1
MM1 pKa = 7.45SKK3 pKa = 10.48VPLTRR8 pKa = 11.84NNIPAWCNIRR18 pKa = 11.84HH19 pKa = 6.09NNLSACSRR27 pKa = 11.84EE28 pKa = 3.75KK29 pKa = 10.48AGYY32 pKa = 8.53VLGHH36 pKa = 5.78ITYY39 pKa = 9.98DD40 pKa = 3.06IKK42 pKa = 11.4SSVGGFGAHH51 pKa = 5.04RR52 pKa = 11.84VGNNSVRR59 pKa = 11.84SVAVKK64 pKa = 10.94CEE66 pKa = 4.04DD67 pKa = 2.92FWLLYY72 pKa = 10.95VKK74 pKa = 7.58TTHH77 pKa = 7.47DD78 pKa = 3.71ATLLPPMIRR87 pKa = 11.84RR88 pKa = 11.84ALSVAYY94 pKa = 10.0SQVDD98 pKa = 4.01GYY100 pKa = 11.4DD101 pKa = 3.38YY102 pKa = 11.51SDD104 pKa = 3.16WQLFRR109 pKa = 11.84YY110 pKa = 9.09LRR112 pKa = 11.84RR113 pKa = 11.84EE114 pKa = 3.93FKK116 pKa = 10.55VDD118 pKa = 2.8RR119 pKa = 11.84KK120 pKa = 9.62MITHH124 pKa = 6.75ARR126 pKa = 11.84VGTGPRR132 pKa = 11.84PEE134 pKa = 4.23EE135 pKa = 3.95FPRR138 pKa = 11.84ATVTGEE144 pKa = 3.63HH145 pKa = 6.15HH146 pKa = 4.79THH148 pKa = 6.31FRR150 pKa = 11.84PEE152 pKa = 4.18EE153 pKa = 3.74VWEE156 pKa = 4.07VSKK159 pKa = 10.81KK160 pKa = 10.16YY161 pKa = 9.66RR162 pKa = 11.84AKK164 pKa = 10.17LRR166 pKa = 11.84AMSVVYY172 pKa = 10.96NNLKK176 pKa = 10.25KK177 pKa = 10.32IEE179 pKa = 4.3GVTEE183 pKa = 4.08AVVSTMFLYY192 pKa = 10.34ILFARR197 pKa = 11.84PQTAYY202 pKa = 11.14LFACSAKK209 pKa = 8.58IWSVRR214 pKa = 11.84DD215 pKa = 3.35INGLSDD221 pKa = 3.32ILKK224 pKa = 9.45TISTPLKK231 pKa = 10.05SVQNNDD237 pKa = 3.34LCDD240 pKa = 3.51VTQLFEE246 pKa = 4.32LQCLVNRR253 pKa = 11.84GIGKK257 pKa = 9.47VDD259 pKa = 3.02WRR261 pKa = 11.84KK262 pKa = 9.57EE263 pKa = 3.58RR264 pKa = 11.84ANRR267 pKa = 11.84EE268 pKa = 3.93KK269 pKa = 10.75PNVVIVDD276 pKa = 3.7EE277 pKa = 4.51KK278 pKa = 11.02KK279 pKa = 10.72VYY281 pKa = 10.22HH282 pKa = 6.23EE283 pKa = 4.18AMNLFRR289 pKa = 11.84MGISHH294 pKa = 7.1GYY296 pKa = 9.6KK297 pKa = 9.17YY298 pKa = 11.44ARR300 pKa = 11.84MDD302 pKa = 3.43LNKK305 pKa = 9.92YY306 pKa = 9.09VKK308 pKa = 10.38SRR310 pKa = 11.84WEE312 pKa = 3.92WVPSGSVHH320 pKa = 5.65SQYY323 pKa = 11.25EE324 pKa = 3.76EE325 pKa = 4.0DD326 pKa = 3.5EE327 pKa = 4.58PYY329 pKa = 10.15IKK331 pKa = 10.1KK332 pKa = 10.88SNMHH336 pKa = 5.15RR337 pKa = 11.84TKK339 pKa = 10.58FVTVNMLSRR348 pKa = 11.84AHH350 pKa = 6.44IRR352 pKa = 11.84RR353 pKa = 11.84IFARR357 pKa = 11.84KK358 pKa = 9.67KK359 pKa = 10.06EE360 pKa = 3.84IHH362 pKa = 6.0AWASVKK368 pKa = 10.46YY369 pKa = 8.97EE370 pKa = 3.86WAKK373 pKa = 10.25QRR375 pKa = 11.84AIYY378 pKa = 10.09GVDD381 pKa = 3.43LTSSIITNFAMFRR394 pKa = 11.84CEE396 pKa = 3.74EE397 pKa = 4.21VFKK400 pKa = 11.14HH401 pKa = 5.86RR402 pKa = 11.84FPVGEE407 pKa = 3.82EE408 pKa = 3.53AAASRR413 pKa = 11.84VHH415 pKa = 6.42KK416 pKa = 9.57RR417 pKa = 11.84LKK419 pKa = 10.36MMLDD423 pKa = 3.72GNEE426 pKa = 4.16SFCYY430 pKa = 10.74DD431 pKa = 3.41FDD433 pKa = 5.14DD434 pKa = 5.86FNAQHH439 pKa = 6.12STGSMYY445 pKa = 11.1AVLQAYY451 pKa = 8.75MDD453 pKa = 3.72VFRR456 pKa = 11.84GSMSRR461 pKa = 11.84DD462 pKa = 3.16QVSAMEE468 pKa = 4.1WVRR471 pKa = 11.84DD472 pKa = 3.78SILSVKK478 pKa = 8.79VHH480 pKa = 5.0NHH482 pKa = 4.61EE483 pKa = 4.17EE484 pKa = 4.26GRR486 pKa = 11.84EE487 pKa = 3.85EE488 pKa = 4.53FYY490 pKa = 10.15KK491 pKa = 10.72TDD493 pKa = 3.38GTLLSGWRR501 pKa = 11.84LTTFMNTALNYY512 pKa = 9.79IYY514 pKa = 10.46FKK516 pKa = 10.88LAGAFDD522 pKa = 3.84VTGVRR527 pKa = 11.84DD528 pKa = 3.88SVHH531 pKa = 6.62NGDD534 pKa = 4.63DD535 pKa = 3.45VLVAIRR541 pKa = 11.84DD542 pKa = 3.53IRR544 pKa = 11.84SACSIHH550 pKa = 6.8GAMARR555 pKa = 11.84INARR559 pKa = 11.84AQATKK564 pKa = 10.8CNVFSVGEE572 pKa = 3.91FLRR575 pKa = 11.84VEE577 pKa = 4.18HH578 pKa = 6.68KK579 pKa = 9.07VTRR582 pKa = 11.84EE583 pKa = 3.68EE584 pKa = 4.2GLGAQYY590 pKa = 9.05LTRR593 pKa = 11.84AAATLAHH600 pKa = 6.4SRR602 pKa = 11.84IEE604 pKa = 4.27SQEE607 pKa = 3.57PTRR610 pKa = 11.84LVDD613 pKa = 3.96SIKK616 pKa = 11.09GMVTRR621 pKa = 11.84CEE623 pKa = 4.16EE624 pKa = 3.43ITARR628 pKa = 11.84SFGMEE633 pKa = 3.73TVAYY637 pKa = 8.82EE638 pKa = 4.22LLTHH642 pKa = 6.1SVRR645 pKa = 11.84RR646 pKa = 11.84LCGIFGVQAEE656 pKa = 4.69DD657 pKa = 4.18GYY659 pKa = 11.67KK660 pKa = 9.82VLKK663 pKa = 10.54GHH665 pKa = 5.79TLVGGAMEE673 pKa = 4.64TFDD676 pKa = 5.56GSIKK680 pKa = 10.24YY681 pKa = 10.04KK682 pKa = 10.14IRR684 pKa = 11.84EE685 pKa = 3.84EE686 pKa = 4.02VLIGKK691 pKa = 7.08TVITADD697 pKa = 3.39NRR699 pKa = 11.84HH700 pKa = 6.13EE701 pKa = 4.1YY702 pKa = 9.24ATLKK706 pKa = 11.22DD707 pKa = 4.07MMPGILDD714 pKa = 3.44YY715 pKa = 11.73AEE717 pKa = 4.57ILNNQYY723 pKa = 11.18GDD725 pKa = 4.39YY726 pKa = 10.9IPIDD730 pKa = 3.98NIKK733 pKa = 10.54KK734 pKa = 9.09KK735 pKa = 10.33IIYY738 pKa = 7.45ATHH741 pKa = 6.38RR742 pKa = 11.84QLEE745 pKa = 4.55VTRR748 pKa = 11.84GTRR751 pKa = 11.84LIVTDD756 pKa = 3.64VQHH759 pKa = 7.05DD760 pKa = 3.75DD761 pKa = 3.02KK762 pKa = 11.52YY763 pKa = 11.08KK764 pKa = 9.83YY765 pKa = 10.49GRR767 pKa = 11.84ALFRR771 pKa = 11.84MYY773 pKa = 10.41KK774 pKa = 10.1GLITIPYY781 pKa = 7.8VEE783 pKa = 4.53KK784 pKa = 10.9ARR786 pKa = 11.84FLGIPPIAMLSHH798 pKa = 7.13SSMKK802 pKa = 10.26FVTKK806 pKa = 10.64LISSVKK812 pKa = 10.58DD813 pKa = 2.91VDD815 pKa = 3.66YY816 pKa = 10.72TLRR819 pKa = 11.84TLLL822 pKa = 4.17

Molecular weight:
94.31 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1581

759

822

790.5

90.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.021 ± 0.219

1.139 ± 0.252

6.831 ± 1.352

5.882 ± 0.157

4.364 ± 0.275

6.452 ± 0.481

2.973 ± 0.436

5.06 ± 0.708

5.313 ± 1.082

8.223 ± 0.725

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.352 ± 0.053

3.922 ± 0.022

3.416 ± 0.771

2.087 ± 0.08

7.211 ± 0.452

6.388 ± 0.047

6.705 ± 0.584

7.653 ± 0.677

1.708 ± 0.195

4.301 ± 0.348

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski