Geodermatophilus sp. TF02-6

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Geodermatophilales; Geodermatophilaceae; Geodermatophilus; unclassified Geodermatophilus

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4244 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A367A3L8|A0A367A3L8_9ACTN TerC family protein OS=Geodermatophilus sp. TF02-6 OX=2250575 GN=DQ238_03350 PE=3 SV=1
MM1 pKa = 7.6AATPPRR7 pKa = 11.84RR8 pKa = 11.84TLAALLAAVALLLVSGCSIVVPGRR32 pKa = 11.84PSAAQPPTDD41 pKa = 3.73DD42 pKa = 3.59VAPGEE47 pKa = 4.14LAVAGATGGPIDD59 pKa = 3.82TLARR63 pKa = 11.84NALTDD68 pKa = 4.66LEE70 pKa = 4.96TYY72 pKa = 8.72WAGQFPDD79 pKa = 4.15VFGQPFQPLQGGYY92 pKa = 10.53FSVDD96 pKa = 3.44PGNVAPGEE104 pKa = 4.13FPQGIGCGADD114 pKa = 3.38PLDD117 pKa = 3.7VEE119 pKa = 5.82GNAFYY124 pKa = 10.7CQASDD129 pKa = 4.2APNSDD134 pKa = 3.73SISYY138 pKa = 10.51DD139 pKa = 3.0RR140 pKa = 11.84AFLQEE145 pKa = 4.66LADD148 pKa = 3.44QYY150 pKa = 11.9GRR152 pKa = 11.84FIPALVMAHH161 pKa = 6.2EE162 pKa = 5.31FGHH165 pKa = 6.69AVQARR170 pKa = 11.84VGYY173 pKa = 8.38PDD175 pKa = 3.67YY176 pKa = 10.82SISVEE181 pKa = 4.12TQADD185 pKa = 4.0CFAGAWTAWVADD197 pKa = 3.98GQAEE201 pKa = 4.23HH202 pKa = 6.15SQIRR206 pKa = 11.84APEE209 pKa = 4.1LDD211 pKa = 3.48EE212 pKa = 4.08VLRR215 pKa = 11.84GYY217 pKa = 11.13LLLRR221 pKa = 11.84DD222 pKa = 3.92PVGTSINTEE231 pKa = 4.01AAHH234 pKa = 6.51GSYY237 pKa = 10.46FDD239 pKa = 3.78RR240 pKa = 11.84VSAFQEE246 pKa = 4.33GFEE249 pKa = 4.8AGPTACRR256 pKa = 11.84DD257 pKa = 3.43DD258 pKa = 4.05FTAQRR263 pKa = 11.84PYY265 pKa = 10.15TQGAFQDD272 pKa = 3.78PSEE275 pKa = 4.33ARR277 pKa = 11.84TGGNSSFRR285 pKa = 11.84EE286 pKa = 4.18AQDD289 pKa = 2.64IAATVLPEE297 pKa = 3.83FWNRR301 pKa = 11.84AFTEE305 pKa = 4.2VFDD308 pKa = 4.31ATFSPPTLEE317 pKa = 4.72PFTGTAPSCAPDD329 pKa = 4.37DD330 pKa = 4.52LDD332 pKa = 5.81LVFCADD338 pKa = 4.01EE339 pKa = 4.23NLVGYY344 pKa = 9.92DD345 pKa = 3.99EE346 pKa = 4.83QDD348 pKa = 3.34LAAPAYY354 pKa = 9.13QQIGDD359 pKa = 4.07YY360 pKa = 10.96AVVTAASLPYY370 pKa = 9.28AQSGRR375 pKa = 11.84EE376 pKa = 3.75QLGRR380 pKa = 11.84STDD383 pKa = 3.42DD384 pKa = 3.02EE385 pKa = 4.23AAIRR389 pKa = 11.84SAVCLTGWFSAAFFDD404 pKa = 5.63GALQSARR411 pKa = 11.84ISPGDD416 pKa = 3.3IDD418 pKa = 4.53EE419 pKa = 4.65SVQFLLEE426 pKa = 4.13YY427 pKa = 9.56GTDD430 pKa = 3.41PSVFPDD436 pKa = 2.99VDD438 pKa = 3.65LTGFQLVDD446 pKa = 3.55LFRR449 pKa = 11.84NGFFDD454 pKa = 4.68GAAACDD460 pKa = 3.64VGVV463 pKa = 3.59

Molecular weight: 49.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A366ZDI2|A0A366ZDI2_9ACTN VWFA domain-containing protein OS=Geodermatophilus sp. TF02-6 OX=2250575 GN=DQ238_20375 PE=4 SV=1
MM1 pKa = 7.3SGRR4 pKa = 11.84RR5 pKa = 11.84GSGRR9 pKa = 11.84GMAGWAMSGRR19 pKa = 11.84GLSGRR24 pKa = 11.84GGSGRR29 pKa = 11.84GMAGRR34 pKa = 11.84GMAGWAMSGRR44 pKa = 11.84GASAGRR50 pKa = 11.84GHH52 pKa = 6.91GRR54 pKa = 11.84PTSRR58 pKa = 11.84GMRR61 pKa = 11.84RR62 pKa = 11.84GRR64 pKa = 11.84PTTAASGLGGVLSGLLRR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 3.65

Molecular weight: 8.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4244

0

4244

1348583

20

1980

317.8

33.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.467 ± 0.067

0.736 ± 0.01

6.251 ± 0.027

5.48 ± 0.039

2.5 ± 0.021

9.663 ± 0.036

2.081 ± 0.018

2.501 ± 0.025

1.197 ± 0.018

10.611 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.499 ± 0.015

1.334 ± 0.015

6.439 ± 0.033

2.677 ± 0.021

8.682 ± 0.038

4.608 ± 0.025

5.925 ± 0.029

10.098 ± 0.038

1.48 ± 0.017

1.769 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski