Porcine adenovirus A serotype 3 (PAdV-3) (Porcine adenovirus 3)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus; Porcine mastadenovirus A

Average proteome isoelectric point is 5.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9W8X7|Q9W8X7_ADEP3 PTP (COOH region) (Fragment) OS=Porcine adenovirus A serotype 3 OX=35265 PE=3 SV=1
MM1 pKa = 7.86ANRR4 pKa = 11.84LHH6 pKa = 7.12LDD8 pKa = 2.82WDD10 pKa = 4.16GNPEE14 pKa = 4.1VVPVLEE20 pKa = 4.5WDD22 pKa = 3.75PVDD25 pKa = 5.69LRR27 pKa = 11.84DD28 pKa = 4.79PSPGDD33 pKa = 3.23EE34 pKa = 4.89GFCEE38 pKa = 4.54PCWEE42 pKa = 4.29SLVDD46 pKa = 3.75GLPDD50 pKa = 3.19EE51 pKa = 4.78WLDD54 pKa = 3.68SVDD57 pKa = 3.59EE58 pKa = 4.47VEE60 pKa = 5.07VIVTEE65 pKa = 4.45GGEE68 pKa = 4.33SEE70 pKa = 4.94DD71 pKa = 4.06SGGSAAGDD79 pKa = 3.42SGGSQGVFEE88 pKa = 4.85MDD90 pKa = 3.39PPEE93 pKa = 4.52EE94 pKa = 4.58GDD96 pKa = 3.89SNEE99 pKa = 3.92EE100 pKa = 4.38DD101 pKa = 3.2ISAVAAEE108 pKa = 4.51VLSEE112 pKa = 3.91LADD115 pKa = 3.65VVFEE119 pKa = 5.31DD120 pKa = 4.72PLAPPSPFVLDD131 pKa = 3.88CPEE134 pKa = 4.01VPGVNCRR141 pKa = 11.84SCDD144 pKa = 3.35YY145 pKa = 11.05HH146 pKa = 8.04RR147 pKa = 11.84FHH149 pKa = 7.96SKK151 pKa = 10.75DD152 pKa = 3.49PNLKK156 pKa = 10.46CSLCYY161 pKa = 10.16MRR163 pKa = 11.84MHH165 pKa = 7.02AFAVYY170 pKa = 9.94GEE172 pKa = 4.6CFWTFVGLCGKK183 pKa = 9.72KK184 pKa = 10.47GKK186 pKa = 9.03SACKK190 pKa = 9.41KK191 pKa = 9.06SHH193 pKa = 5.01VLFPIFCLFRR203 pKa = 11.84SCFSSTSQVGFPGTWRR219 pKa = 11.84PARR222 pKa = 11.84TQEE225 pKa = 4.14EE226 pKa = 4.7VLLL229 pKa = 4.34

Molecular weight: 25.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9W8S1|Q9W8S1_ADEP3 Isoform of Q84177 Hexon protein OS=Porcine adenovirus A serotype 3 OX=35265 GN=L3 PE=2 SV=1
MM1 pKa = 7.9AILVSPSNNSGWGLGLRR18 pKa = 11.84SMYY21 pKa = 10.65GGARR25 pKa = 11.84RR26 pKa = 11.84LSPDD30 pKa = 2.67HH31 pKa = 6.08PVIVRR36 pKa = 11.84RR37 pKa = 11.84HH38 pKa = 4.92YY39 pKa = 8.16RR40 pKa = 11.84TNWGSLKK47 pKa = 10.49GRR49 pKa = 11.84VAPSTIATTDD59 pKa = 3.49DD60 pKa = 3.48PVADD64 pKa = 4.0VVNAIAGATRR74 pKa = 11.84RR75 pKa = 11.84RR76 pKa = 11.84RR77 pKa = 11.84RR78 pKa = 11.84HH79 pKa = 4.42RR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 11.84RR84 pKa = 11.84AARR87 pKa = 11.84VSSVAVTGDD96 pKa = 3.39PVADD100 pKa = 3.41VVNAVEE106 pKa = 4.0AVARR110 pKa = 11.84RR111 pKa = 11.84RR112 pKa = 11.84RR113 pKa = 11.84ARR115 pKa = 11.84RR116 pKa = 11.84RR117 pKa = 11.84SSRR120 pKa = 11.84MQTTGDD126 pKa = 3.47PVADD130 pKa = 3.36VVAAVEE136 pKa = 4.03AVARR140 pKa = 11.84RR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 11.84STRR146 pKa = 11.84RR147 pKa = 11.84RR148 pKa = 11.84RR149 pKa = 11.84RR150 pKa = 11.84RR151 pKa = 11.84SAPAILGVRR160 pKa = 11.84RR161 pKa = 11.84SRR163 pKa = 11.84RR164 pKa = 11.84LRR166 pKa = 11.84KK167 pKa = 8.81RR168 pKa = 11.84TSSS171 pKa = 3.11

Molecular weight: 19.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14

2

16

6661

171

938

416.3

46.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.677 ± 0.664

1.666 ± 0.356

5.33 ± 0.331

6.951 ± 0.697

3.948 ± 0.343

6.756 ± 0.646

2.147 ± 0.363

2.927 ± 0.313

2.282 ± 0.298

9.758 ± 0.518

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.327 ± 0.138

4.053 ± 0.607

6.876 ± 0.398

4.564 ± 0.349

7.792 ± 0.817

7.506 ± 0.58

5.69 ± 0.566

6.35 ± 0.415

1.216 ± 0.115

3.183 ± 0.46
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski