Amino acid dipepetide frequency for Porcine adenovirus A serotype 3 (PAdV-3) (Porcine adenovirus 3)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
9.61AlaAla: 9.61 ± 1.997
1.351AlaCys: 1.351 ± 0.555
3.303AlaAsp: 3.303 ± 0.77
4.354AlaGlu: 4.354 ± 0.864
3.003AlaPhe: 3.003 ± 0.435
7.658AlaGly: 7.658 ± 2.087
1.952AlaHis: 1.952 ± 0.622
3.303AlaIle: 3.303 ± 0.856
1.051AlaLys: 1.051 ± 0.47
8.559AlaLeu: 8.559 ± 1.524
1.502AlaMet: 1.502 ± 0.42
3.453AlaAsn: 3.453 ± 0.888
7.057AlaPro: 7.057 ± 0.725
3.604AlaGln: 3.604 ± 0.712
6.006AlaArg: 6.006 ± 1.508
6.156AlaSer: 6.156 ± 1.228
5.255AlaThr: 5.255 ± 0.904
6.306AlaVal: 6.306 ± 0.858
0.901AlaTrp: 0.901 ± 0.34
2.402AlaTyr: 2.402 ± 0.632
0.0AlaXaa: 0.0 ± 0.0
Cys
0.901CysAla: 0.901 ± 0.437
0.751CysCys: 0.751 ± 0.378
1.051CysAsp: 1.051 ± 0.361
0.751CysGlu: 0.751 ± 0.318
1.351CysPhe: 1.351 ± 0.496
1.201CysGly: 1.201 ± 0.505
0.0CysHis: 0.0 ± 0.0
0.45CysIle: 0.45 ± 0.209
0.45CysLys: 0.45 ± 0.238
1.351CysLeu: 1.351 ± 0.504
0.3CysMet: 0.3 ± 0.27
0.751CysAsn: 0.751 ± 0.372
0.901CysPro: 0.901 ± 0.308
0.601CysGln: 0.601 ± 0.223
1.201CysArg: 1.201 ± 0.355
1.502CysSer: 1.502 ± 0.503
0.15CysThr: 0.15 ± 0.155
0.45CysVal: 0.45 ± 0.222
0.601CysTrp: 0.601 ± 0.35
1.952CysTyr: 1.952 ± 0.553
0.0CysXaa: 0.0 ± 0.0
Asp
3.904AspAla: 3.904 ± 0.697
0.751AspCys: 0.751 ± 0.317
2.402AspAsp: 2.402 ± 0.774
6.306AspGlu: 6.306 ± 1.003
2.703AspPhe: 2.703 ± 0.592
3.604AspGly: 3.604 ± 0.743
0.601AspHis: 0.601 ± 0.282
2.252AspIle: 2.252 ± 0.616
0.901AspLys: 0.901 ± 0.565
5.706AspLeu: 5.706 ± 0.951
0.901AspMet: 0.901 ± 0.4
1.952AspAsn: 1.952 ± 0.631
4.655AspPro: 4.655 ± 1.138
0.901AspGln: 0.901 ± 0.352
3.153AspArg: 3.153 ± 0.764
4.054AspSer: 4.054 ± 0.909
2.252AspThr: 2.252 ± 0.74
3.904AspVal: 3.904 ± 0.761
0.601AspTrp: 0.601 ± 0.264
1.802AspTyr: 1.802 ± 0.413
0.0AspXaa: 0.0 ± 0.0
Glu
6.607GluAla: 6.607 ± 0.953
0.901GluCys: 0.901 ± 0.545
6.907GluAsp: 6.907 ± 0.974
11.862GluGlu: 11.862 ± 2.74
1.952GluPhe: 1.952 ± 0.424
6.456GluGly: 6.456 ± 1.172
0.751GluHis: 0.751 ± 0.304
1.201GluIle: 1.201 ± 0.43
0.601GluLys: 0.601 ± 0.284
4.955GluLeu: 4.955 ± 1.232
2.402GluMet: 2.402 ± 0.668
2.553GluAsn: 2.553 ± 0.625
2.703GluPro: 2.703 ± 0.602
2.853GluGln: 2.853 ± 0.634
5.405GluArg: 5.405 ± 1.311
1.952GluSer: 1.952 ± 0.548
3.153GluThr: 3.153 ± 0.661
4.354GluVal: 4.354 ± 1.336
1.201GluTrp: 1.201 ± 0.459
0.751GluTyr: 0.751 ± 0.404
0.0GluXaa: 0.0 ± 0.0
Phe
2.402PheAla: 2.402 ± 0.422
1.051PheCys: 1.051 ± 0.412
2.252PheAsp: 2.252 ± 0.709
3.003PheGlu: 3.003 ± 0.561
1.802PhePhe: 1.802 ± 0.475
0.751PheGly: 0.751 ± 0.369
1.051PheHis: 1.051 ± 0.256
1.802PheIle: 1.802 ± 0.474
0.901PheLys: 0.901 ± 0.316
4.354PheLeu: 4.354 ± 0.803
1.051PheMet: 1.051 ± 0.278
1.502PheAsn: 1.502 ± 0.482
1.652PhePro: 1.652 ± 0.432
1.351PheGln: 1.351 ± 0.539
3.904PheArg: 3.904 ± 0.619
3.904PheSer: 3.904 ± 0.709
1.802PheThr: 1.802 ± 0.811
3.453PheVal: 3.453 ± 0.608
0.15PheTrp: 0.15 ± 0.166
1.351PheTyr: 1.351 ± 0.271
0.0PheXaa: 0.0 ± 0.0
Gly
6.907GlyAla: 6.907 ± 1.448
0.901GlyCys: 0.901 ± 0.412
3.754GlyAsp: 3.754 ± 0.808
4.805GlyGlu: 4.805 ± 0.748
2.252GlyPhe: 2.252 ± 0.551
7.508GlyGly: 7.508 ± 2.046
1.051GlyHis: 1.051 ± 0.382
1.502GlyIle: 1.502 ± 0.557
1.051GlyLys: 1.051 ± 0.41
6.006GlyLeu: 6.006 ± 1.202
2.102GlyMet: 2.102 ± 0.479
3.003GlyAsn: 3.003 ± 0.803
2.703GlyPro: 2.703 ± 0.585
1.802GlyGln: 1.802 ± 0.592
4.955GlyArg: 4.955 ± 1.253
7.057GlySer: 7.057 ± 1.176
3.604GlyThr: 3.604 ± 0.721
4.354GlyVal: 4.354 ± 0.931
0.751GlyTrp: 0.751 ± 0.326
1.502GlyTyr: 1.502 ± 0.52
0.0GlyXaa: 0.0 ± 0.0
His
1.502HisAla: 1.502 ± 0.422
0.751HisCys: 0.751 ± 0.425
0.601HisAsp: 0.601 ± 0.219
0.751HisGlu: 0.751 ± 0.293
0.601HisPhe: 0.601 ± 0.294
1.051HisGly: 1.051 ± 0.221
0.901HisHis: 0.901 ± 0.399
0.901HisIle: 0.901 ± 0.275
0.3HisLys: 0.3 ± 0.226
2.703HisLeu: 2.703 ± 0.736
0.45HisMet: 0.45 ± 0.349
0.45HisAsn: 0.45 ± 0.296
1.351HisPro: 1.351 ± 0.333
1.201HisGln: 1.201 ± 0.503
2.553HisArg: 2.553 ± 0.401
1.652HisSer: 1.652 ± 0.549
1.502HisThr: 1.502 ± 0.632
0.901HisVal: 0.901 ± 0.34
0.45HisTrp: 0.45 ± 0.229
0.901HisTyr: 0.901 ± 0.311
0.0HisXaa: 0.0 ± 0.0
Ile
3.303IleAla: 3.303 ± 0.728
0.0IleCys: 0.0 ± 0.0
1.952IleAsp: 1.952 ± 0.877
1.051IleGlu: 1.051 ± 0.417
1.502IlePhe: 1.502 ± 0.568
2.102IleGly: 2.102 ± 0.9
0.15IleHis: 0.15 ± 0.139
0.45IleIle: 0.45 ± 0.253
1.051IleLys: 1.051 ± 0.354
3.153IleLeu: 3.153 ± 0.653
0.751IleMet: 0.751 ± 0.268
2.402IleAsn: 2.402 ± 0.473
1.502IlePro: 1.502 ± 0.727
1.201IleGln: 1.201 ± 0.37
2.102IleArg: 2.102 ± 0.73
2.402IleSer: 2.402 ± 0.55
1.802IleThr: 1.802 ± 0.448
1.502IleVal: 1.502 ± 0.502
0.3IleTrp: 0.3 ± 0.201
0.601IleTyr: 0.601 ± 0.26
0.0IleXaa: 0.0 ± 0.0
Lys
1.351LysAla: 1.351 ± 0.578
0.45LysCys: 0.45 ± 0.269
1.502LysAsp: 1.502 ± 0.7
1.201LysGlu: 1.201 ± 0.369
0.751LysPhe: 0.751 ± 0.693
1.351LysGly: 1.351 ± 0.354
0.601LysHis: 0.601 ± 0.24
2.553LysIle: 2.553 ± 0.81
1.051LysLys: 1.051 ± 0.433
1.652LysLeu: 1.652 ± 0.611
0.0LysMet: 0.0 ± 0.0
0.3LysAsn: 0.3 ± 0.209
1.051LysPro: 1.051 ± 0.279
1.051LysGln: 1.051 ± 0.319
2.102LysArg: 2.102 ± 0.502
2.102LysSer: 2.102 ± 0.819
0.901LysThr: 0.901 ± 0.224
2.102LysVal: 2.102 ± 0.524
0.3LysTrp: 0.3 ± 0.304
0.45LysTyr: 0.45 ± 0.226
0.0LysXaa: 0.0 ± 0.0
Leu
8.408LeuAla: 8.408 ± 1.235
1.802LeuCys: 1.802 ± 0.585
4.955LeuAsp: 4.955 ± 0.843
5.255LeuGlu: 5.255 ± 0.953
2.553LeuPhe: 2.553 ± 0.736
5.856LeuGly: 5.856 ± 0.738
2.703LeuHis: 2.703 ± 0.854
1.351LeuIle: 1.351 ± 0.511
3.303LeuLys: 3.303 ± 0.715
9.009LeuLeu: 9.009 ± 1.084
2.402LeuMet: 2.402 ± 0.664
3.604LeuAsn: 3.604 ± 0.606
7.508LeuPro: 7.508 ± 1.059
5.856LeuGln: 5.856 ± 1.078
8.408LeuArg: 8.408 ± 1.285
5.706LeuSer: 5.706 ± 1.027
7.508LeuThr: 7.508 ± 1.702
6.907LeuVal: 6.907 ± 0.954
1.502LeuTrp: 1.502 ± 0.477
3.003LeuTyr: 3.003 ± 1.376
0.0LeuXaa: 0.0 ± 0.0
Met
2.252MetAla: 2.252 ± 0.626
0.601MetCys: 0.601 ± 0.324
1.502MetAsp: 1.502 ± 0.42
1.502MetGlu: 1.502 ± 0.321
0.751MetPhe: 0.751 ± 0.362
1.201MetGly: 1.201 ± 0.302
1.201MetHis: 1.201 ± 0.448
0.601MetIle: 0.601 ± 0.282
0.45MetLys: 0.45 ± 0.266
1.952MetLeu: 1.952 ± 0.456
0.751MetMet: 0.751 ± 0.234
0.901MetAsn: 0.901 ± 0.38
1.351MetPro: 1.351 ± 0.395
1.802MetGln: 1.802 ± 0.502
1.652MetArg: 1.652 ± 0.533
1.802MetSer: 1.802 ± 0.407
0.901MetThr: 0.901 ± 0.402
1.051MetVal: 1.051 ± 0.411
0.45MetTrp: 0.45 ± 0.287
0.601MetTyr: 0.601 ± 0.276
0.0MetXaa: 0.0 ± 0.0
Asn
2.553AsnAla: 2.553 ± 0.444
0.901AsnCys: 0.901 ± 0.345
1.802AsnAsp: 1.802 ± 0.513
2.102AsnGlu: 2.102 ± 0.436
2.102AsnPhe: 2.102 ± 0.469
2.703AsnGly: 2.703 ± 0.888
0.751AsnHis: 0.751 ± 0.368
1.802AsnIle: 1.802 ± 0.786
0.601AsnLys: 0.601 ± 0.294
3.754AsnLeu: 3.754 ± 1.067
1.201AsnMet: 1.201 ± 0.513
2.102AsnAsn: 2.102 ± 0.887
3.003AsnPro: 3.003 ± 0.719
1.952AsnGln: 1.952 ± 0.642
2.252AsnArg: 2.252 ± 0.592
2.553AsnSer: 2.553 ± 0.753
3.303AsnThr: 3.303 ± 0.641
2.252AsnVal: 2.252 ± 0.578
0.751AsnTrp: 0.751 ± 0.373
2.102AsnTyr: 2.102 ± 0.633
0.0AsnXaa: 0.0 ± 0.0
Pro
6.006ProAla: 6.006 ± 0.589
1.051ProCys: 1.051 ± 0.375
3.754ProAsp: 3.754 ± 0.752
4.505ProGlu: 4.505 ± 0.974
2.402ProPhe: 2.402 ± 0.51
4.204ProGly: 4.204 ± 0.9
1.201ProHis: 1.201 ± 0.36
1.351ProIle: 1.351 ± 0.664
1.802ProLys: 1.802 ± 0.469
6.456ProLeu: 6.456 ± 1.086
0.751ProMet: 0.751 ± 0.341
2.102ProAsn: 2.102 ± 0.874
8.258ProPro: 8.258 ± 2.356
2.402ProGln: 2.402 ± 0.505
5.105ProArg: 5.105 ± 0.994
6.757ProSer: 6.757 ± 0.741
3.754ProThr: 3.754 ± 0.935
4.204ProVal: 4.204 ± 1.107
0.601ProTrp: 0.601 ± 0.322
2.102ProTyr: 2.102 ± 0.807
0.0ProXaa: 0.0 ± 0.0
Gln
4.054GlnAla: 4.054 ± 0.731
0.601GlnCys: 0.601 ± 0.302
1.802GlnAsp: 1.802 ± 0.482
3.604GlnGlu: 3.604 ± 0.708
1.351GlnPhe: 1.351 ± 0.447
1.802GlnGly: 1.802 ± 0.5
1.502GlnHis: 1.502 ± 0.591
0.901GlnIle: 0.901 ± 0.422
1.351GlnLys: 1.351 ± 0.606
6.006GlnLeu: 6.006 ± 1.069
1.051GlnMet: 1.051 ± 0.387
1.652GlnAsn: 1.652 ± 0.515
2.703GlnPro: 2.703 ± 0.513
4.505GlnGln: 4.505 ± 1.601
3.003GlnArg: 3.003 ± 0.797
1.952GlnSer: 1.952 ± 0.643
3.153GlnThr: 3.153 ± 0.654
3.003GlnVal: 3.003 ± 0.575
0.601GlnTrp: 0.601 ± 0.311
1.051GlnTyr: 1.051 ± 0.406
0.0GlnXaa: 0.0 ± 0.0
Arg
6.907ArgAla: 6.907 ± 1.255
1.201ArgCys: 1.201 ± 0.501
3.604ArgAsp: 3.604 ± 0.831
4.354ArgGlu: 4.354 ± 1.123
3.003ArgPhe: 3.003 ± 0.85
4.505ArgGly: 4.505 ± 1.311
2.402ArgHis: 2.402 ± 0.916
1.351ArgIle: 1.351 ± 0.432
2.402ArgLys: 2.402 ± 0.665
7.207ArgLeu: 7.207 ± 1.244
1.802ArgMet: 1.802 ± 0.554
3.003ArgAsn: 3.003 ± 0.665
4.955ArgPro: 4.955 ± 0.967
4.505ArgGln: 4.505 ± 0.917
10.961ArgArg: 10.961 ± 4.186
6.306ArgSer: 6.306 ± 1.152
2.703ArgThr: 2.703 ± 0.565
3.453ArgVal: 3.453 ± 0.888
1.201ArgTrp: 1.201 ± 0.267
2.102ArgTyr: 2.102 ± 0.475
0.0ArgXaa: 0.0 ± 0.0
Ser
7.057SerAla: 7.057 ± 0.748
1.201SerCys: 1.201 ± 0.535
2.703SerAsp: 2.703 ± 0.536
4.805SerGlu: 4.805 ± 0.745
3.303SerPhe: 3.303 ± 0.819
6.757SerGly: 6.757 ± 1.212
0.45SerHis: 0.45 ± 0.237
1.502SerIle: 1.502 ± 0.67
1.201SerLys: 1.201 ± 0.346
8.258SerLeu: 8.258 ± 1.772
1.802SerMet: 1.802 ± 0.52
1.952SerAsn: 1.952 ± 0.632
5.105SerPro: 5.105 ± 0.723
2.853SerGln: 2.853 ± 0.642
6.607SerArg: 6.607 ± 1.531
6.907SerSer: 6.907 ± 1.584
4.805SerThr: 4.805 ± 0.889
4.054SerVal: 4.054 ± 0.633
0.601SerTrp: 0.601 ± 0.254
3.153SerTyr: 3.153 ± 0.75
0.0SerXaa: 0.0 ± 0.0
Thr
4.354ThrAla: 4.354 ± 0.691
1.051ThrCys: 1.051 ± 0.391
2.402ThrAsp: 2.402 ± 0.806
3.604ThrGlu: 3.604 ± 0.609
4.204ThrPhe: 4.204 ± 0.846
2.853ThrGly: 2.853 ± 0.688
2.402ThrHis: 2.402 ± 0.428
2.252ThrIle: 2.252 ± 0.464
1.351ThrLys: 1.351 ± 0.448
5.856ThrLeu: 5.856 ± 0.944
0.751ThrMet: 0.751 ± 0.31
3.303ThrAsn: 3.303 ± 0.912
4.505ThrPro: 4.505 ± 0.812
1.652ThrGln: 1.652 ± 0.66
2.853ThrArg: 2.853 ± 0.699
3.003ThrSer: 3.003 ± 0.934
3.453ThrThr: 3.453 ± 0.999
3.904ThrVal: 3.904 ± 0.392
0.601ThrTrp: 0.601 ± 0.242
2.402ThrTyr: 2.402 ± 0.84
0.0ThrXaa: 0.0 ± 0.0
Val
6.006ValAla: 6.006 ± 1.55
0.901ValCys: 0.901 ± 0.257
3.904ValAsp: 3.904 ± 0.753
3.604ValGlu: 3.604 ± 0.639
2.102ValPhe: 2.102 ± 0.466
2.703ValGly: 2.703 ± 0.719
0.601ValHis: 0.601 ± 0.312
2.553ValIle: 2.553 ± 0.591
1.802ValLys: 1.802 ± 0.484
5.405ValLeu: 5.405 ± 1.045
1.502ValMet: 1.502 ± 0.387
3.453ValAsn: 3.453 ± 0.765
4.655ValPro: 4.655 ± 0.722
3.153ValGln: 3.153 ± 0.672
3.003ValArg: 3.003 ± 0.642
4.955ValSer: 4.955 ± 1.044
4.204ValThr: 4.204 ± 0.828
5.556ValVal: 5.556 ± 1.152
0.3ValTrp: 0.3 ± 0.182
3.153ValTyr: 3.153 ± 0.442
0.0ValXaa: 0.0 ± 0.0
Trp
0.751TrpAla: 0.751 ± 0.233
0.0TrpCys: 0.0 ± 0.0
1.201TrpAsp: 1.201 ± 0.531
0.601TrpGlu: 0.601 ± 0.301
0.3TrpPhe: 0.3 ± 0.183
1.502TrpGly: 1.502 ± 0.631
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.15TrpLys: 0.15 ± 0.16
1.502TrpLeu: 1.502 ± 0.398
0.3TrpMet: 0.3 ± 0.182
0.601TrpAsn: 0.601 ± 0.312
0.751TrpPro: 0.751 ± 0.32
0.751TrpGln: 0.751 ± 0.38
0.901TrpArg: 0.901 ± 0.367
1.201TrpSer: 1.201 ± 0.672
1.051TrpThr: 1.051 ± 0.321
0.3TrpVal: 0.3 ± 0.193
0.15TrpTrp: 0.15 ± 0.16
0.15TrpTyr: 0.15 ± 0.15
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.952TyrAla: 1.952 ± 0.681
0.45TyrCys: 0.45 ± 0.219
1.952TyrAsp: 1.952 ± 0.543
1.502TyrGlu: 1.502 ± 0.481
1.502TyrPhe: 1.502 ± 0.622
1.802TyrGly: 1.802 ± 0.377
1.201TyrHis: 1.201 ± 0.375
1.201TyrIle: 1.201 ± 0.36
1.051TyrLys: 1.051 ± 0.345
3.754TyrLeu: 3.754 ± 1.031
1.351TyrMet: 1.351 ± 0.392
1.502TyrAsn: 1.502 ± 0.469
2.402TyrPro: 2.402 ± 0.503
1.652TyrGln: 1.652 ± 0.432
1.802TyrArg: 1.802 ± 0.38
3.153TyrSer: 3.153 ± 0.58
1.652TyrThr: 1.652 ± 0.495
1.502TyrVal: 1.502 ± 0.391
0.15TyrTrp: 0.15 ± 0.15
0.3TyrTyr: 0.3 ± 0.183
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 16 proteins (6661 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski