Lutimaribacter litoralis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Lutimaribacter

Average proteome isoelectric point is 6.22

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4022 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A521B5X1|A0A521B5X1_9RHOB Glyoxylase beta-lactamase superfamily II OS=Lutimaribacter litoralis OX=1010611 GN=SAMN06265173_102155 PE=4 SV=1
MM1 pKa = 6.76PTGYY5 pKa = 10.73LVTLGNYY12 pKa = 9.53SLNSGDD18 pKa = 4.2TIGTSTYY25 pKa = 9.68SFSSASVIGSGSMSYY40 pKa = 10.68YY41 pKa = 10.07GRR43 pKa = 11.84QYY45 pKa = 9.94WYY47 pKa = 9.89QSSSYY52 pKa = 9.11RR53 pKa = 11.84TITGTYY59 pKa = 9.67YY60 pKa = 10.57EE61 pKa = 4.22ATNGNVYY68 pKa = 9.65FVPSSTLNLVQSASASTVPSYY89 pKa = 7.7TTLDD93 pKa = 3.59DD94 pKa = 3.92TVEE97 pKa = 4.17GTGADD102 pKa = 3.89DD103 pKa = 6.82LIDD106 pKa = 3.78ASYY109 pKa = 11.36GGDD112 pKa = 3.41PDD114 pKa = 4.72GDD116 pKa = 3.99HH117 pKa = 7.03VDD119 pKa = 4.34DD120 pKa = 6.46GIGTGTGGMGDD131 pKa = 3.9SIEE134 pKa = 4.21AAGGDD139 pKa = 3.66DD140 pKa = 3.25TVYY143 pKa = 10.87AGSGDD148 pKa = 3.72DD149 pKa = 4.1TITGGGGSDD158 pKa = 4.19YY159 pKa = 11.02IDD161 pKa = 4.16GGDD164 pKa = 4.01GNDD167 pKa = 3.61VIYY170 pKa = 10.99GDD172 pKa = 5.1DD173 pKa = 3.61VTSAASTAEE182 pKa = 3.93SMNWSSAGSDD192 pKa = 3.45EE193 pKa = 4.14QDD195 pKa = 2.67ISGGFTQTTGVMDD208 pKa = 3.83VNVSFSTDD216 pKa = 3.04GNPNTTFTVEE226 pKa = 4.17STTTSYY232 pKa = 11.15VGSGEE237 pKa = 4.31GFNSTSALEE246 pKa = 4.18IGSQNTGDD254 pKa = 4.07AGTVTLDD261 pKa = 3.4FTTNQPDD268 pKa = 3.69SFSDD272 pKa = 3.31NVEE275 pKa = 3.97NVSFRR280 pKa = 11.84LNDD283 pKa = 3.1VDD285 pKa = 4.5GLQDD289 pKa = 3.25GWQDD293 pKa = 3.57VITITAVDD301 pKa = 3.62ANGNTVTVLLGDD313 pKa = 3.62NGEE316 pKa = 4.59DD317 pKa = 3.37VVSGNTVTADD327 pKa = 3.64LTRR330 pKa = 11.84DD331 pKa = 3.38SYY333 pKa = 11.86TDD335 pKa = 3.37ADD337 pKa = 3.83GSVLVTIPGPVQSISIDD354 pKa = 3.62YY355 pKa = 11.23DD356 pKa = 3.25NGFANGQILIVSDD369 pKa = 3.32VHH371 pKa = 8.09FEE373 pKa = 4.4TIPLTPGDD381 pKa = 3.91DD382 pKa = 4.11TILGGAGDD390 pKa = 4.1DD391 pKa = 4.82LIYY394 pKa = 11.3GEE396 pKa = 6.22DD397 pKa = 3.77GDD399 pKa = 4.73DD400 pKa = 3.38WLGGGDD406 pKa = 4.85GSDD409 pKa = 3.35TLIGGVGNDD418 pKa = 3.79TLAGGAGGDD427 pKa = 4.14SLSSGAGMDD436 pKa = 3.57YY437 pKa = 11.07LDD439 pKa = 4.45YY440 pKa = 10.64SGSSAGVDD448 pKa = 3.42VNLGLGTASGGDD460 pKa = 3.56AEE462 pKa = 5.24GDD464 pKa = 3.78TLAGGLDD471 pKa = 4.32GIIGSDD477 pKa = 3.24WDD479 pKa = 4.03DD480 pKa = 3.49TLTGYY485 pKa = 11.13DD486 pKa = 3.49MQGIDD491 pKa = 5.86NGTAWTNVFYY501 pKa = 11.03GGGGNDD507 pKa = 4.01YY508 pKa = 10.8IDD510 pKa = 4.07GAGADD515 pKa = 3.5DD516 pKa = 4.14FLYY519 pKa = 11.07GEE521 pKa = 4.97EE522 pKa = 4.72GDD524 pKa = 3.96DD525 pKa = 4.08TILGGTGNDD534 pKa = 3.9LVDD537 pKa = 3.81GGIGNDD543 pKa = 3.58SLLGGDD549 pKa = 4.99GNDD552 pKa = 3.6TLIGGDD558 pKa = 3.84GDD560 pKa = 5.6DD561 pKa = 4.07ILSGGGGADD570 pKa = 3.05ILSGGTGNDD579 pKa = 3.33QITVGSGDD587 pKa = 3.63TATGGAGDD595 pKa = 4.39DD596 pKa = 3.73TFTIQGGGGTITIDD610 pKa = 3.18GGEE613 pKa = 4.22GGEE616 pKa = 4.39GSGDD620 pKa = 3.58TIDD623 pKa = 5.3FGGQIDD629 pKa = 4.12WGSITYY635 pKa = 9.3TNTVPSDD642 pKa = 3.42LAGSVTLADD651 pKa = 3.67GTVVTFSNIEE661 pKa = 4.06SVVICFKK668 pKa = 10.88AGTRR672 pKa = 11.84IEE674 pKa = 4.5TPHH677 pKa = 6.03GPRR680 pKa = 11.84RR681 pKa = 11.84IEE683 pKa = 4.03DD684 pKa = 4.09LRR686 pKa = 11.84PGDD689 pKa = 3.85PVITRR694 pKa = 11.84DD695 pKa = 3.55NGVQPVRR702 pKa = 11.84WAGRR706 pKa = 11.84RR707 pKa = 11.84RR708 pKa = 11.84VPGQGEE714 pKa = 3.89FAPIRR719 pKa = 11.84FAPGTVGNHH728 pKa = 5.64RR729 pKa = 11.84ALIVSPQHH737 pKa = 6.87RR738 pKa = 11.84ILHH741 pKa = 6.09HH742 pKa = 6.49SPAATLLFNSTEE754 pKa = 4.01VLVAARR760 pKa = 11.84HH761 pKa = 5.02LVNGKK766 pKa = 7.3TIRR769 pKa = 11.84QVEE772 pKa = 4.37KK773 pKa = 10.69DD774 pKa = 3.39QIDD777 pKa = 3.87YY778 pKa = 11.09VHH780 pKa = 7.08ILFDD784 pKa = 3.14RR785 pKa = 11.84HH786 pKa = 5.94EE787 pKa = 4.73IIFAEE792 pKa = 5.17GAASEE797 pKa = 4.5SFHH800 pKa = 6.95PGRR803 pKa = 11.84HH804 pKa = 5.04GLNGVMGSARR814 pKa = 11.84EE815 pKa = 3.87EE816 pKa = 4.02LFALFPEE823 pKa = 4.82LRR825 pKa = 11.84SDD827 pKa = 3.65PDD829 pKa = 3.68SFGDD833 pKa = 3.52TARR836 pKa = 11.84PCLRR840 pKa = 11.84EE841 pKa = 3.8YY842 pKa = 10.36EE843 pKa = 4.26ARR845 pKa = 11.84LLTPAA850 pKa = 4.61

Molecular weight: 86.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A521E4U2|A0A521E4U2_9RHOB Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase OS=Lutimaribacter litoralis OX=1010611 GN=SAMN06265173_11478 PE=4 SV=1
MM1 pKa = 7.61NANQLINMVLRR12 pKa = 11.84MVLRR16 pKa = 11.84KK17 pKa = 9.48AVNTGVNRR25 pKa = 11.84LAGGKK30 pKa = 9.44SGPQGVKK37 pKa = 8.45AAKK40 pKa = 9.83RR41 pKa = 11.84ARR43 pKa = 11.84QAMRR47 pKa = 11.84VTRR50 pKa = 11.84RR51 pKa = 11.84LNKK54 pKa = 9.82FF55 pKa = 3.06

Molecular weight: 6.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4022

0

4022

1232936

25

2127

306.5

33.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.873 ± 0.046

0.895 ± 0.014

6.183 ± 0.037

5.509 ± 0.032

3.703 ± 0.022

8.665 ± 0.04

2.089 ± 0.018

5.286 ± 0.026

3.495 ± 0.033

10.042 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.924 ± 0.02

2.783 ± 0.022

5.086 ± 0.025

3.53 ± 0.02

6.392 ± 0.038

5.038 ± 0.026

5.554 ± 0.028

7.25 ± 0.03

1.378 ± 0.016

2.325 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski