Amino acid dipepetide frequency for Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (Microsporum canis)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	8.101AlaAla: 8.101 ± 0.067	1.046AlaCys: 1.046 ± 0.017	3.978AlaAsp: 3.978 ± 0.029	4.902AlaGlu: 4.902 ± 0.051	2.869AlaPhe: 2.869 ± 0.029	5.432AlaGly: 5.432 ± 0.041	1.675AlaHis: 1.675 ± 0.021	4.33AlaIle: 4.33 ± 0.038	3.992AlaLys: 3.992 ± 0.037	7.286AlaLeu: 7.286 ± 0.052	1.839AlaMet: 1.839 ± 0.019	2.846AlaAsn: 2.846 ± 0.024	4.353AlaPro: 4.353 ± 0.043	3.084AlaGln: 3.084 ± 0.03	4.654AlaArg: 4.654 ± 0.037	7.059AlaSer: 7.059 ± 0.045	4.912AlaThr: 4.912 ± 0.034	5.009AlaVal: 5.009 ± 0.033	1.023AlaTrp: 1.023 ± 0.016	2.025AlaTyr: 2.025 ± 0.024	0.0AlaXaa: 0.0 ± 0.0
Cys	0.886CysAla: 0.886 ± 0.017	0.265CysCys: 0.265 ± 0.009	0.658CysAsp: 0.658 ± 0.013	0.629CysGlu: 0.629 ± 0.014	0.554CysPhe: 0.554 ± 0.012	0.957CysGly: 0.957 ± 0.019	0.349CysHis: 0.349 ± 0.011	0.789CysIle: 0.789 ± 0.017	0.556CysLys: 0.556 ± 0.015	1.336CysLeu: 1.336 ± 0.02	0.284CysMet: 0.284 ± 0.009	0.447CysAsn: 0.447 ± 0.011	0.714CysPro: 0.714 ± 0.015	0.47CysGln: 0.47 ± 0.011	0.815CysArg: 0.815 ± 0.015	1.044CysSer: 1.044 ± 0.019	0.661CysThr: 0.661 ± 0.014	0.772CysVal: 0.772 ± 0.015	0.195CysTrp: 0.195 ± 0.007	0.391CysTyr: 0.391 ± 0.012	0.0CysXaa: 0.0 ± 0.0
Asp	4.255AspAla: 4.255 ± 0.033	0.66AspCys: 0.66 ± 0.013	4.057AspAsp: 4.057 ± 0.043	4.454AspGlu: 4.454 ± 0.039	2.07AspPhe: 2.07 ± 0.023	4.085AspGly: 4.085 ± 0.036	1.203AspHis: 1.203 ± 0.02	3.581AspIle: 3.581 ± 0.031	2.546AspLys: 2.546 ± 0.026	4.776AspLeu: 4.776 ± 0.039	1.274AspMet: 1.274 ± 0.018	2.038AspAsn: 2.038 ± 0.023	3.155AspPro: 3.155 ± 0.029	1.834AspGln: 1.834 ± 0.022	3.043AspArg: 3.043 ± 0.032	4.287AspSer: 4.287 ± 0.036	3.07AspThr: 3.07 ± 0.029	3.39AspVal: 3.39 ± 0.034	0.796AspTrp: 0.796 ± 0.012	1.529AspTyr: 1.529 ± 0.017	0.0AspXaa: 0.0 ± 0.0
Glu	5.166GluAla: 5.166 ± 0.044	0.681GluCys: 0.681 ± 0.014	4.194GluAsp: 4.194 ± 0.039	5.537GluGlu: 5.537 ± 0.065	1.982GluPhe: 1.982 ± 0.024	3.613GluGly: 3.613 ± 0.03	1.351GluHis: 1.351 ± 0.018	3.242GluIle: 3.242 ± 0.031	4.0GluLys: 4.0 ± 0.039	5.323GluLeu: 5.323 ± 0.045	1.43GluMet: 1.43 ± 0.02	2.509GluAsn: 2.509 ± 0.027	2.931GluPro: 2.931 ± 0.049	2.468GluGln: 2.468 ± 0.026	3.936GluArg: 3.936 ± 0.04	4.468GluSer: 4.468 ± 0.038	3.428GluThr: 3.428 ± 0.039	3.422GluVal: 3.422 ± 0.033	0.82GluTrp: 0.82 ± 0.016	1.79GluTyr: 1.79 ± 0.018	0.0GluXaa: 0.0 ± 0.0
Phe	2.75PheAla: 2.75 ± 0.033	0.578PheCys: 0.578 ± 0.012	2.264PheAsp: 2.264 ± 0.027	2.054PheGlu: 2.054 ± 0.025	1.534PhePhe: 1.534 ± 0.026	2.637PheGly: 2.637 ± 0.035	0.915PheHis: 0.915 ± 0.015	1.984PheIle: 1.984 ± 0.027	1.569PheLys: 1.569 ± 0.021	3.413PheLeu: 3.413 ± 0.035	0.763PheMet: 0.763 ± 0.015	1.494PheAsn: 1.494 ± 0.019	1.972PhePro: 1.972 ± 0.023	1.357PheGln: 1.357 ± 0.018	1.976PheArg: 1.976 ± 0.022	3.181PheSer: 3.181 ± 0.031	2.15PheThr: 2.15 ± 0.025	2.191PheVal: 2.191 ± 0.029	0.569PheTrp: 0.569 ± 0.012	1.128PheTyr: 1.128 ± 0.02	0.0PheXaa: 0.0 ± 0.0
Gly	4.719GlyAla: 4.719 ± 0.037	0.906GlyCys: 0.906 ± 0.017	3.562GlyAsp: 3.562 ± 0.029	3.68GlyGlu: 3.68 ± 0.03	2.596GlyPhe: 2.596 ± 0.029	5.415GlyGly: 5.415 ± 0.067	1.668GlyHis: 1.668 ± 0.023	3.647GlyIle: 3.647 ± 0.033	3.628GlyLys: 3.628 ± 0.037	5.747GlyLeu: 5.747 ± 0.046	1.573GlyMet: 1.573 ± 0.024	2.554GlyAsn: 2.554 ± 0.024	3.256GlyPro: 3.256 ± 0.037	2.535GlyGln: 2.535 ± 0.031	4.095GlyArg: 4.095 ± 0.031	5.781GlySer: 5.781 ± 0.042	3.764GlyThr: 3.764 ± 0.034	4.117GlyVal: 4.117 ± 0.039	1.077GlyTrp: 1.077 ± 0.018	2.116GlyTyr: 2.116 ± 0.024	0.0GlyXaa: 0.0 ± 0.0
His	1.702HisAla: 1.702 ± 0.019	0.319HisCys: 0.319 ± 0.009	1.289HisAsp: 1.289 ± 0.02	1.3HisGlu: 1.3 ± 0.019	0.874HisPhe: 0.874 ± 0.015	1.761HisGly: 1.761 ± 0.022	0.904HisHis: 0.904 ± 0.018	1.372HisIle: 1.372 ± 0.02	0.958HisLys: 0.958 ± 0.015	2.243HisLeu: 2.243 ± 0.025	0.466HisMet: 0.466 ± 0.01	0.892HisAsn: 0.892 ± 0.015	1.715HisPro: 1.715 ± 0.021	1.092HisGln: 1.092 ± 0.021	1.601HisArg: 1.601 ± 0.022	2.046HisSer: 2.046 ± 0.021	1.313HisThr: 1.313 ± 0.02	1.349HisVal: 1.349 ± 0.018	0.302HisTrp: 0.302 ± 0.009	0.705HisTyr: 0.705 ± 0.012	0.0HisXaa: 0.0 ± 0.0
Ile	3.995IleAla: 3.995 ± 0.04	0.831IleCys: 0.831 ± 0.016	3.091IleAsp: 3.091 ± 0.028	3.059IleGlu: 3.059 ± 0.03	2.114IlePhe: 2.114 ± 0.029	3.213IleGly: 3.213 ± 0.036	1.338IleHis: 1.338 ± 0.018	2.853IleIle: 2.853 ± 0.031	2.461IleLys: 2.461 ± 0.027	4.905IleLeu: 4.905 ± 0.039	1.048IleMet: 1.048 ± 0.017	2.006IleAsn: 2.006 ± 0.023	3.475IlePro: 3.475 ± 0.031	2.077IleGln: 2.077 ± 0.024	3.092IleArg: 3.092 ± 0.026	4.564IleSer: 4.564 ± 0.036	3.018IleThr: 3.018 ± 0.029	3.137IleVal: 3.137 ± 0.035	0.714IleTrp: 0.714 ± 0.016	1.592IleTyr: 1.592 ± 0.02	0.0IleXaa: 0.0 ± 0.0
Lys	4.263LysAla: 4.263 ± 0.035	0.561LysCys: 0.561 ± 0.012	2.919LysAsp: 2.919 ± 0.026	3.644LysGlu: 3.644 ± 0.04	1.556LysPhe: 1.556 ± 0.019	3.163LysGly: 3.163 ± 0.03	1.139LysHis: 1.139 ± 0.017	2.456LysIle: 2.456 ± 0.025	3.594LysLys: 3.594 ± 0.059	4.424LysLeu: 4.424 ± 0.036	1.067LysMet: 1.067 ± 0.017	1.91LysAsn: 1.91 ± 0.023	3.01LysPro: 3.01 ± 0.031	2.023LysGln: 2.023 ± 0.022	3.615LysArg: 3.615 ± 0.034	3.807LysSer: 3.807 ± 0.038	2.84LysThr: 2.84 ± 0.03	2.853LysVal: 2.853 ± 0.032	0.653LysTrp: 0.653 ± 0.014	1.513LysTyr: 1.513 ± 0.02	0.0LysXaa: 0.0 ± 0.0
Leu	7.382LeuAla: 7.382 ± 0.045	1.254LeuCys: 1.254 ± 0.022	5.136LeuAsp: 5.136 ± 0.036	5.588LeuGlu: 5.588 ± 0.042	3.379LeuPhe: 3.379 ± 0.038	5.605LeuGly: 5.605 ± 0.045	2.244LeuHis: 2.244 ± 0.025	4.085LeuIle: 4.085 ± 0.04	4.474LeuLys: 4.474 ± 0.039	8.509LeuLeu: 8.509 ± 0.075	1.719LeuMet: 1.719 ± 0.022	3.318LeuAsn: 3.318 ± 0.031	5.609LeuPro: 5.609 ± 0.045	3.809LeuGln: 3.809 ± 0.034	5.834LeuArg: 5.834 ± 0.04	7.814LeuSer: 7.814 ± 0.051	4.785LeuThr: 4.785 ± 0.032	5.276LeuVal: 5.276 ± 0.046	1.132LeuTrp: 1.132 ± 0.018	2.423LeuTyr: 2.423 ± 0.027	0.0LeuXaa: 0.0 ± 0.0
Met	2.199MetAla: 2.199 ± 0.023	0.233MetCys: 0.233 ± 0.006	1.264MetAsp: 1.264 ± 0.017	1.401MetGlu: 1.401 ± 0.021	0.734MetPhe: 0.734 ± 0.015	1.448MetGly: 1.448 ± 0.02	0.46MetHis: 0.46 ± 0.01	1.025MetIle: 1.025 ± 0.015	1.119MetLys: 1.119 ± 0.017	1.807MetLeu: 1.807 ± 0.023	0.543MetMet: 0.543 ± 0.012	0.837MetAsn: 0.837 ± 0.015	1.195MetPro: 1.195 ± 0.018	0.831MetGln: 0.831 ± 0.017	1.177MetArg: 1.177 ± 0.015	1.799MetSer: 1.799 ± 0.023	1.21MetThr: 1.21 ± 0.019	1.318MetVal: 1.318 ± 0.019	0.24MetTrp: 0.24 ± 0.007	0.495MetTyr: 0.495 ± 0.012	0.0MetXaa: 0.0 ± 0.0
Asn	2.976AsnAla: 2.976 ± 0.029	0.486AsnCys: 0.486 ± 0.012	2.087AsnAsp: 2.087 ± 0.025	2.199AsnGlu: 2.199 ± 0.025	1.393AsnPhe: 1.393 ± 0.019	2.984AsnGly: 2.984 ± 0.032	0.896AsnHis: 0.896 ± 0.016	2.408AsnIle: 2.408 ± 0.025	1.737AsnLys: 1.737 ± 0.019	3.297AsnLeu: 3.297 ± 0.032	0.885AsnMet: 0.885 ± 0.015	1.711AsnAsn: 1.711 ± 0.025	2.585AsnPro: 2.585 ± 0.028	1.402AsnGln: 1.402 ± 0.022	2.085AsnArg: 2.085 ± 0.024	3.107AsnSer: 3.107 ± 0.028	2.365AsnThr: 2.365 ± 0.027	2.189AsnVal: 2.189 ± 0.024	0.514AsnTrp: 0.514 ± 0.012	1.063AsnTyr: 1.063 ± 0.015	0.0AsnXaa: 0.0 ± 0.0
Pro	5.008ProAla: 5.008 ± 0.047	0.588ProCys: 0.588 ± 0.013	3.2ProAsp: 3.2 ± 0.028	3.876ProGlu: 3.876 ± 0.046	2.108ProPhe: 2.108 ± 0.024	3.928ProGly: 3.928 ± 0.035	1.386ProHis: 1.386 ± 0.022	2.756ProIle: 2.756 ± 0.028	2.811ProLys: 2.811 ± 0.035	4.912ProLeu: 4.912 ± 0.033	1.07ProMet: 1.07 ± 0.018	2.312ProAsn: 2.312 ± 0.023	5.313ProPro: 5.313 ± 0.077	2.565ProGln: 2.565 ± 0.033	3.358ProArg: 3.358 ± 0.037	6.437ProSer: 6.437 ± 0.059	4.069ProThr: 4.069 ± 0.043	3.528ProVal: 3.528 ± 0.039	0.689ProTrp: 0.689 ± 0.013	1.529ProTyr: 1.529 ± 0.022	0.0ProXaa: 0.0 ± 0.0
Gln	3.326GlnAla: 3.326 ± 0.032	0.445GlnCys: 0.445 ± 0.011	1.986GlnAsp: 1.986 ± 0.019	2.383GlnGlu: 2.383 ± 0.031	1.315GlnPhe: 1.315 ± 0.018	2.385GlnGly: 2.385 ± 0.029	1.162GlnHis: 1.162 ± 0.019	1.856GlnIle: 1.856 ± 0.021	2.111GlnLys: 2.111 ± 0.028	3.531GlnLeu: 3.531 ± 0.031	0.835GlnMet: 0.835 ± 0.017	1.619GlnAsn: 1.619 ± 0.024	2.766GlnPro: 2.766 ± 0.043	2.757GlnGln: 2.757 ± 0.068	2.708GlnArg: 2.708 ± 0.026	3.239GlnSer: 3.239 ± 0.034	2.242GlnThr: 2.242 ± 0.028	2.121GlnVal: 2.121 ± 0.026	0.507GlnTrp: 0.507 ± 0.011	1.16GlnTyr: 1.16 ± 0.018	0.0GlnXaa: 0.0 ± 0.0
Arg	4.565ArgAla: 4.565 ± 0.035	0.781ArgCys: 0.781 ± 0.014	3.373ArgAsp: 3.373 ± 0.033	4.006ArgGlu: 4.006 ± 0.041	2.125ArgPhe: 2.125 ± 0.027	3.734ArgGly: 3.734 ± 0.037	1.596ArgHis: 1.596 ± 0.025	3.081ArgIle: 3.081 ± 0.029	3.535ArgLys: 3.535 ± 0.034	5.592ArgLeu: 5.592 ± 0.04	1.277ArgMet: 1.277 ± 0.018	2.39ArgAsn: 2.39 ± 0.025	3.552ArgPro: 3.552 ± 0.039	2.654ArgGln: 2.654 ± 0.028	5.142ArgArg: 5.142 ± 0.054	4.975ArgSer: 4.975 ± 0.044	3.194ArgThr: 3.194 ± 0.029	3.326ArgVal: 3.326 ± 0.024	0.895ArgTrp: 0.895 ± 0.015	1.752ArgTyr: 1.752 ± 0.021	0.0ArgXaa: 0.0 ± 0.0
Ser	6.412SerAla: 6.412 ± 0.042	0.963SerCys: 0.963 ± 0.017	4.161SerAsp: 4.161 ± 0.036	4.261SerGlu: 4.261 ± 0.04	3.152SerPhe: 3.152 ± 0.027	5.579SerGly: 5.579 ± 0.045	2.169SerHis: 2.169 ± 0.024	4.489SerIle: 4.489 ± 0.034	4.231SerLys: 4.231 ± 0.034	7.764SerLeu: 7.764 ± 0.055	1.843SerMet: 1.843 ± 0.022	3.375SerAsn: 3.375 ± 0.032	5.897SerPro: 5.897 ± 0.065	3.523SerGln: 3.523 ± 0.036	5.441SerArg: 5.441 ± 0.05	9.662SerSer: 9.662 ± 0.084	5.932SerThr: 5.932 ± 0.047	4.544SerVal: 4.544 ± 0.031	1.067SerTrp: 1.067 ± 0.019	2.208SerTyr: 2.208 ± 0.022	0.0SerXaa: 0.0 ± 0.0
Thr	4.979ThrAla: 4.979 ± 0.034	0.764ThrCys: 0.764 ± 0.016	2.821ThrAsp: 2.821 ± 0.027	3.182ThrGlu: 3.182 ± 0.031	2.128ThrPhe: 2.128 ± 0.025	4.001ThrGly: 4.001 ± 0.039	1.3ThrHis: 1.3 ± 0.02	3.173ThrIle: 3.173 ± 0.031	2.749ThrLys: 2.749 ± 0.027	5.202ThrLeu: 5.202 ± 0.037	1.173ThrMet: 1.173 ± 0.017	2.161ThrAsn: 2.161 ± 0.023	4.396ThrPro: 4.396 ± 0.044	2.065ThrGln: 2.065 ± 0.024	3.109ThrArg: 3.109 ± 0.028	5.553ThrSer: 5.553 ± 0.044	4.08ThrThr: 4.08 ± 0.042	3.616ThrVal: 3.616 ± 0.029	0.748ThrTrp: 0.748 ± 0.013	1.566ThrTyr: 1.566 ± 0.022	0.0ThrXaa: 0.0 ± 0.0
Val	4.728ValAla: 4.728 ± 0.035	0.811ValCys: 0.811 ± 0.016	3.615ValAsp: 3.615 ± 0.034	3.793ValGlu: 3.793 ± 0.035	2.331ValPhe: 2.331 ± 0.031	3.708ValGly: 3.708 ± 0.036	1.319ValHis: 1.319 ± 0.019	3.064ValIle: 3.064 ± 0.03	2.965ValLys: 2.965 ± 0.029	5.325ValLeu: 5.325 ± 0.048	1.262ValMet: 1.262 ± 0.018	2.198ValAsn: 2.198 ± 0.025	3.4ValPro: 3.4 ± 0.027	2.228ValGln: 2.228 ± 0.024	3.299ValArg: 3.299 ± 0.028	4.67ValSer: 4.67 ± 0.037	3.301ValThr: 3.301 ± 0.03	3.907ValVal: 3.907 ± 0.039	0.742ValTrp: 0.742 ± 0.014	1.715ValTyr: 1.715 ± 0.02	0.0ValXaa: 0.0 ± 0.0
Trp	1.032TrpAla: 1.032 ± 0.021	0.165TrpCys: 0.165 ± 0.006	0.823TrpAsp: 0.823 ± 0.014	0.822TrpGlu: 0.822 ± 0.015	0.472TrpPhe: 0.472 ± 0.012	0.809TrpGly: 0.809 ± 0.014	0.335TrpHis: 0.335 ± 0.01	0.728TrpIle: 0.728 ± 0.012	0.797TrpLys: 0.797 ± 0.016	1.247TrpLeu: 1.247 ± 0.019	0.355TrpMet: 0.355 ± 0.009	0.616TrpAsn: 0.616 ± 0.013	0.557TrpPro: 0.557 ± 0.012	0.504TrpGln: 0.504 ± 0.012	0.878TrpArg: 0.878 ± 0.016	0.977TrpSer: 0.977 ± 0.015	0.799TrpThr: 0.799 ± 0.014	0.781TrpVal: 0.781 ± 0.013	0.235TrpTrp: 0.235 ± 0.009	0.393TrpTyr: 0.393 ± 0.01	0.0TrpXaa: 0.0 ± 0.0
Tyr	1.972TyrAla: 1.972 ± 0.028	0.435TyrCys: 0.435 ± 0.01	1.623TyrAsp: 1.623 ± 0.019	1.52TyrGlu: 1.52 ± 0.019	1.195TyrPhe: 1.195 ± 0.016	1.981TyrGly: 1.981 ± 0.027	0.791TyrHis: 0.791 ± 0.012	1.663TyrIle: 1.663 ± 0.02	1.175TyrLys: 1.175 ± 0.016	2.736TyrLeu: 2.736 ± 0.028	0.628TyrMet: 0.628 ± 0.012	1.134TyrAsn: 1.134 ± 0.016	1.592TyrPro: 1.592 ± 0.02	1.176TyrGln: 1.176 ± 0.019	1.687TyrArg: 1.687 ± 0.019	2.202TyrSer: 2.202 ± 0.026	1.635TyrThr: 1.635 ± 0.017	1.537TyrVal: 1.537 ± 0.024	0.41TyrTrp: 0.41 ± 0.01	0.951TyrTyr: 0.951 ± 0.016	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 8764 proteins (4258598 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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