Flavobacterium aurantiibacter

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2902 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A255ZQK0|A0A255ZQK0_9FLAO Uncharacterized protein OS=Flavobacterium aurantiibacter OX=2023067 GN=CHX27_09375 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 10.36KK3 pKa = 9.42IQLFFLALSTALTLSGCEE21 pKa = 3.99TDD23 pKa = 5.45GGDD26 pKa = 4.15SKK28 pKa = 11.84LNLIEE33 pKa = 4.66AAVPDD38 pKa = 3.56ITINDD43 pKa = 3.76TSDD46 pKa = 3.43EE47 pKa = 4.52IINLVAVTNGGDD59 pKa = 3.31INLSLTLDD67 pKa = 3.31KK68 pKa = 11.55GFGKK72 pKa = 10.27VSSMDD77 pKa = 3.25VVLFYY82 pKa = 11.11YY83 pKa = 10.58KK84 pKa = 10.38SDD86 pKa = 3.06GSVFRR91 pKa = 11.84SVLQSGITEE100 pKa = 4.6FPATVSITKK109 pKa = 10.45NSIFDD114 pKa = 3.42AFEE117 pKa = 4.24QINVPADD124 pKa = 3.59FEE126 pKa = 4.71VGDD129 pKa = 4.34EE130 pKa = 4.23LLITADD136 pKa = 3.43LTLPNGTVIKK146 pKa = 9.75MYY148 pKa = 10.85NDD150 pKa = 3.71DD151 pKa = 3.63GSRR154 pKa = 11.84NFGANVANSAVYY166 pKa = 10.21SVSQSFLVSCPSDD179 pKa = 3.15LGGTYY184 pKa = 10.33NYY186 pKa = 8.33STTDD190 pKa = 2.87AYY192 pKa = 10.42EE193 pKa = 4.1PGGASVAGPITGTVTFTAIGGGAYY217 pKa = 9.21EE218 pKa = 4.54ISDD221 pKa = 3.38ASFGGWEE228 pKa = 4.42AIYY231 pKa = 10.6GPGNISEE238 pKa = 4.57GVTLVDD244 pKa = 3.2VCNTIQFGGNDD255 pKa = 3.74QFGDD259 pKa = 3.9TYY261 pKa = 11.32TMSNLVVNGASLSFSWTNTYY281 pKa = 11.16GEE283 pKa = 4.55GGEE286 pKa = 4.4VTLTRR291 pKa = 11.84PDD293 pKa = 3.57GSPWPPLSLL302 pKa = 4.52

Molecular weight: 31.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A255ZQJ0|A0A255ZQJ0_9FLAO Translation initiation factor SUI1-related protein OS=Flavobacterium aurantiibacter OX=2023067 GN=CHX27_08580 PE=3 SV=1
MM1 pKa = 7.65HH2 pKa = 7.53IFAQGVAAEE11 pKa = 4.43SRR13 pKa = 11.84AEE15 pKa = 4.05RR16 pKa = 11.84KK17 pKa = 8.8PVQPAAVRR25 pKa = 11.84RR26 pKa = 11.84PTEE29 pKa = 3.86AVPQFGGTVLEE40 pKa = 4.56RR41 pKa = 11.84CALQRR46 pKa = 11.84KK47 pKa = 5.44TRR49 pKa = 11.84PAALLYY55 pKa = 9.86FHH57 pKa = 7.45EE58 pKa = 5.08IFAAGCAQKK67 pKa = 9.74TGIDD71 pKa = 3.33TFTRR75 pKa = 11.84QITLLVCVPLLKK87 pKa = 10.25ILAHH91 pKa = 5.35VRR93 pKa = 11.84RR94 pKa = 4.37

Molecular weight: 10.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2902

0

2902

924509

34

3242

318.6

35.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.558 ± 0.056

0.851 ± 0.017

5.197 ± 0.033

6.162 ± 0.057

5.572 ± 0.039

6.245 ± 0.049

1.668 ± 0.023

7.201 ± 0.043

6.954 ± 0.076

9.468 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.921 ± 0.021

5.804 ± 0.05

3.577 ± 0.033

3.825 ± 0.026

3.933 ± 0.032

6.544 ± 0.044

6.092 ± 0.073

6.576 ± 0.041

0.979 ± 0.017

3.868 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski