Zooshikella ganghwensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Zooshikella

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5263 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P9VN65|A0A4P9VN65_9GAMM Uncharacterized protein OS=Zooshikella ganghwensis OX=202772 GN=B9G39_10600 PE=4 SV=1
MM1 pKa = 7.29SRR3 pKa = 11.84VLIYY7 pKa = 9.11GVCCFVVGLNSAQAVIIAGDD27 pKa = 3.65VTGGSAATAGGIFIKK42 pKa = 10.39LIPPIGDD49 pKa = 3.33VGDD52 pKa = 5.24DD53 pKa = 3.74NFNDD57 pKa = 3.55PNLYY61 pKa = 10.83GFDD64 pKa = 3.67EE65 pKa = 4.81DD66 pKa = 3.96QNIIIPAPLTVDD78 pKa = 3.66IGPSATLPTGTEE90 pKa = 4.09VASHH94 pKa = 5.51YY95 pKa = 11.02VVFDD99 pKa = 3.8PASSQRR105 pKa = 11.84MIGYY109 pKa = 9.87VDD111 pKa = 4.57FDD113 pKa = 4.21APILAIMTKK122 pKa = 8.84TATLAASDD130 pKa = 3.89FLANVSANYY139 pKa = 9.8LSPSARR145 pKa = 11.84GLEE148 pKa = 4.34SADD151 pKa = 3.29SVVIDD156 pKa = 3.95PVV158 pKa = 3.16

Molecular weight: 16.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P9VS72|A0A4P9VS72_9GAMM ATP synthase subunit delta OS=Zooshikella ganghwensis OX=202772 GN=atpH PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.55RR3 pKa = 11.84TFQPSCLKK11 pKa = 10.41RR12 pKa = 11.84KK13 pKa = 7.77RR14 pKa = 11.84THH16 pKa = 5.91GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.34NGRR28 pKa = 11.84QILKK32 pKa = 9.88RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.23GRR39 pKa = 11.84KK40 pKa = 8.31QLAAA44 pKa = 4.14

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5263

0

5263

1647448

23

5975

313.0

35.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.996 ± 0.036

1.166 ± 0.015

5.235 ± 0.034

5.833 ± 0.033

4.031 ± 0.025

6.308 ± 0.04

2.503 ± 0.019

6.557 ± 0.033

5.711 ± 0.032

10.505 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.151 ± 0.019

4.475 ± 0.031

4.187 ± 0.025

5.269 ± 0.04

4.59 ± 0.027

6.562 ± 0.026

5.578 ± 0.035

6.484 ± 0.027

1.392 ± 0.014

3.466 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski