Aeromicrobium choanae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Aeromicrobium

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3277 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4Z1V5|A0A1T4Z1V5_9ACTN Uncharacterized protein OS=Aeromicrobium choanae OX=1736691 GN=SAMN06295964_1723 PE=4 SV=1
MM1 pKa = 7.97RR2 pKa = 11.84VRR4 pKa = 11.84LLLLSALVLPILAACGGGDD23 pKa = 4.39DD24 pKa = 5.61DD25 pKa = 4.78SASSSGEE32 pKa = 3.67CTYY35 pKa = 11.36AEE37 pKa = 4.46EE38 pKa = 4.89GSAAKK43 pKa = 10.5DD44 pKa = 3.06ADD46 pKa = 4.13LPPAEE51 pKa = 4.66LLAPEE56 pKa = 4.46TLTMKK61 pKa = 9.91TNRR64 pKa = 11.84GTFALTLDD72 pKa = 4.42AEE74 pKa = 4.53AAPCTVNSFASLAEE88 pKa = 3.66QGYY91 pKa = 10.37FDD93 pKa = 3.37GTKK96 pKa = 9.91CHH98 pKa = 6.59RR99 pKa = 11.84LVPGFVLQCGDD110 pKa = 3.84PSASGTGGPGYY121 pKa = 8.93TFEE124 pKa = 6.26DD125 pKa = 4.39EE126 pKa = 4.52LSGDD130 pKa = 3.53EE131 pKa = 4.43TYY133 pKa = 10.53PAGTLAMANSGPDD146 pKa = 3.41TNGSQFFIVLDD157 pKa = 4.15DD158 pKa = 4.58AEE160 pKa = 5.07LPAAYY165 pKa = 8.55TVFGTVDD172 pKa = 3.3EE173 pKa = 5.36AGLEE177 pKa = 4.05AARR180 pKa = 11.84AIAAEE185 pKa = 4.32GNGPDD190 pKa = 3.72GVAPKK195 pKa = 10.17SDD197 pKa = 3.47VVIEE201 pKa = 4.34SVSS204 pKa = 3.07

Molecular weight: 20.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4YVY6|A0A1T4YVY6_9ACTN Solute carrier family 10 (Sodium/bile acid cotransporter) member 7 OS=Aeromicrobium choanae OX=1736691 GN=SAMN06295964_1096 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.56KK16 pKa = 9.27HH17 pKa = 5.36RR18 pKa = 11.84KK19 pKa = 5.5MLKK22 pKa = 7.41RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3277

0

3277

1069643

30

2996

326.4

35.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.824 ± 0.053

0.629 ± 0.009

6.509 ± 0.035

5.946 ± 0.043

3.007 ± 0.026

8.973 ± 0.036

2.137 ± 0.023

3.995 ± 0.033

2.134 ± 0.036

10.075 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.889 ± 0.019

1.82 ± 0.022

5.367 ± 0.027

2.711 ± 0.024

7.456 ± 0.049

5.451 ± 0.028

6.219 ± 0.048

9.445 ± 0.042

1.528 ± 0.017

1.884 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski