Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_389

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.105AlaAla: 8.105 ± 4.074
0.623AlaCys: 0.623 ± 0.586
3.117AlaAsp: 3.117 ± 1.381
4.364AlaGlu: 4.364 ± 2.363
2.494AlaPhe: 2.494 ± 0.899
3.741AlaGly: 3.741 ± 1.534
0.623AlaHis: 0.623 ± 0.565
4.364AlaIle: 4.364 ± 1.646
6.234AlaLys: 6.234 ± 1.966
1.87AlaLeu: 1.87 ± 1.05
3.117AlaMet: 3.117 ± 1.243
3.117AlaAsn: 3.117 ± 0.922
1.247AlaPro: 1.247 ± 0.878
4.364AlaGln: 4.364 ± 2.4
3.741AlaArg: 3.741 ± 1.083
2.494AlaSer: 2.494 ± 1.899
4.364AlaThr: 4.364 ± 1.668
6.234AlaVal: 6.234 ± 2.349
1.247AlaTrp: 1.247 ± 0.67
3.117AlaTyr: 3.117 ± 1.569
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.87CysGly: 1.87 ± 1.408
0.0CysHis: 0.0 ± 0.0
1.247CysIle: 1.247 ± 1.171
0.623CysLys: 0.623 ± 0.723
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.247CysPro: 1.247 ± 0.764
0.0CysGln: 0.0 ± 0.0
1.247CysArg: 1.247 ± 0.771
0.623CysSer: 0.623 ± 0.565
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.623CysTrp: 0.623 ± 0.586
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.247AspAla: 1.247 ± 0.878
0.623AspCys: 0.623 ± 0.565
1.87AspAsp: 1.87 ± 0.728
6.858AspGlu: 6.858 ± 1.196
4.364AspPhe: 4.364 ± 1.245
4.364AspGly: 4.364 ± 1.421
0.623AspHis: 0.623 ± 0.439
4.364AspIle: 4.364 ± 2.917
3.117AspLys: 3.117 ± 0.954
3.741AspLeu: 3.741 ± 1.08
1.87AspMet: 1.87 ± 1.183
3.117AspAsn: 3.117 ± 1.451
0.0AspPro: 0.0 ± 0.0
2.494AspGln: 2.494 ± 1.34
1.87AspArg: 1.87 ± 1.007
3.741AspSer: 3.741 ± 0.973
3.117AspThr: 3.117 ± 0.968
1.87AspVal: 1.87 ± 0.85
0.623AspTrp: 0.623 ± 0.644
4.988AspTyr: 4.988 ± 0.823
0.0AspXaa: 0.0 ± 0.0
Glu
4.988GluAla: 4.988 ± 1.777
0.623GluCys: 0.623 ± 0.586
3.741GluAsp: 3.741 ± 1.356
4.364GluGlu: 4.364 ± 1.586
2.494GluPhe: 2.494 ± 0.643
4.364GluGly: 4.364 ± 1.568
1.87GluHis: 1.87 ± 0.99
6.234GluIle: 6.234 ± 1.35
11.222GluLys: 11.222 ± 4.799
2.494GluLeu: 2.494 ± 0.988
1.87GluMet: 1.87 ± 1.052
6.858GluAsn: 6.858 ± 1.502
1.247GluPro: 1.247 ± 0.771
3.741GluGln: 3.741 ± 0.772
4.988GluArg: 4.988 ± 0.947
3.741GluSer: 3.741 ± 1.552
3.117GluThr: 3.117 ± 2.964
5.611GluVal: 5.611 ± 1.153
1.87GluTrp: 1.87 ± 1.055
4.364GluTyr: 4.364 ± 1.233
0.0GluXaa: 0.0 ± 0.0
Phe
1.247PheAla: 1.247 ± 0.67
0.0PheCys: 0.0 ± 0.0
1.87PheAsp: 1.87 ± 1.18
3.117PheGlu: 3.117 ± 1.513
1.247PhePhe: 1.247 ± 0.573
1.247PheGly: 1.247 ± 0.764
0.0PheHis: 0.0 ± 0.0
2.494PheIle: 2.494 ± 0.859
1.87PheLys: 1.87 ± 0.99
4.364PheLeu: 4.364 ± 0.979
0.623PheMet: 0.623 ± 0.565
0.623PheAsn: 0.623 ± 0.723
0.0PhePro: 0.0 ± 0.0
1.247PheGln: 1.247 ± 0.91
3.741PheArg: 3.741 ± 1.266
4.988PheSer: 4.988 ± 1.625
1.87PheThr: 1.87 ± 0.848
0.623PheVal: 0.623 ± 0.439
0.0PheTrp: 0.0 ± 0.0
3.117PheTyr: 3.117 ± 0.63
0.0PheXaa: 0.0 ± 0.0
Gly
4.364GlyAla: 4.364 ± 1.613
0.0GlyCys: 0.0 ± 0.0
6.234GlyAsp: 6.234 ± 2.101
7.481GlyGlu: 7.481 ± 2.786
3.117GlyPhe: 3.117 ± 1.198
4.988GlyGly: 4.988 ± 2.153
0.0GlyHis: 0.0 ± 0.0
7.481GlyIle: 7.481 ± 2.559
2.494GlyLys: 2.494 ± 1.272
4.364GlyLeu: 4.364 ± 2.48
2.494GlyMet: 2.494 ± 1.847
4.988GlyAsn: 4.988 ± 1.663
0.623GlyPro: 0.623 ± 0.439
1.247GlyGln: 1.247 ± 0.771
2.494GlyArg: 2.494 ± 0.99
5.611GlySer: 5.611 ± 2.345
5.611GlyThr: 5.611 ± 2.232
0.623GlyVal: 0.623 ± 0.439
0.623GlyTrp: 0.623 ± 0.439
2.494GlyTyr: 2.494 ± 0.643
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.623HisAsp: 0.623 ± 0.439
0.623HisGlu: 0.623 ± 0.565
0.623HisPhe: 0.623 ± 0.565
1.87HisGly: 1.87 ± 0.616
1.247HisHis: 1.247 ± 1.171
1.247HisIle: 1.247 ± 0.878
0.623HisLys: 0.623 ± 0.586
1.87HisLeu: 1.87 ± 1.349
0.623HisMet: 0.623 ± 0.586
1.87HisAsn: 1.87 ± 0.925
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
1.247HisArg: 1.247 ± 1.171
0.623HisSer: 0.623 ± 0.565
0.623HisThr: 0.623 ± 0.439
0.0HisVal: 0.0 ± 0.0
1.247HisTrp: 1.247 ± 0.494
1.247HisTyr: 1.247 ± 0.878
0.0HisXaa: 0.0 ± 0.0
Ile
3.117IleAla: 3.117 ± 0.55
0.0IleCys: 0.0 ± 0.0
6.858IleAsp: 6.858 ± 1.434
7.481IleGlu: 7.481 ± 2.056
1.247IlePhe: 1.247 ± 0.927
4.364IleGly: 4.364 ± 1.484
1.247IleHis: 1.247 ± 0.764
3.117IleIle: 3.117 ± 0.881
4.364IleLys: 4.364 ± 2.197
6.234IleLeu: 6.234 ± 1.34
1.247IleMet: 1.247 ± 0.969
5.611IleAsn: 5.611 ± 1.735
6.234IlePro: 6.234 ± 1.859
3.117IleGln: 3.117 ± 0.55
3.741IleArg: 3.741 ± 1.405
3.741IleSer: 3.741 ± 1.295
3.117IleThr: 3.117 ± 1.515
3.117IleVal: 3.117 ± 1.135
3.117IleTrp: 3.117 ± 0.832
4.364IleTyr: 4.364 ± 0.698
0.0IleXaa: 0.0 ± 0.0
Lys
6.858LysAla: 6.858 ± 3.034
0.623LysCys: 0.623 ± 0.586
6.858LysAsp: 6.858 ± 2.45
6.234LysGlu: 6.234 ± 2.31
1.87LysPhe: 1.87 ± 0.812
4.364LysGly: 4.364 ± 1.845
0.0LysHis: 0.0 ± 0.0
3.741LysIle: 3.741 ± 2.571
6.858LysLys: 6.858 ± 3.515
4.988LysLeu: 4.988 ± 2.025
2.494LysMet: 2.494 ± 1.206
2.494LysAsn: 2.494 ± 1.039
3.741LysPro: 3.741 ± 1.457
2.494LysGln: 2.494 ± 1.931
3.117LysArg: 3.117 ± 1.976
1.247LysSer: 1.247 ± 0.707
6.858LysThr: 6.858 ± 1.291
3.741LysVal: 3.741 ± 1.295
2.494LysTrp: 2.494 ± 1.861
3.117LysTyr: 3.117 ± 1.239
0.0LysXaa: 0.0 ± 0.0
Leu
3.741LeuAla: 3.741 ± 1.393
0.623LeuCys: 0.623 ± 0.723
3.117LeuAsp: 3.117 ± 1.633
6.234LeuGlu: 6.234 ± 1.178
1.247LeuPhe: 1.247 ± 0.803
5.611LeuGly: 5.611 ± 1.9
1.87LeuHis: 1.87 ± 1.482
7.481LeuIle: 7.481 ± 1.673
8.728LeuLys: 8.728 ± 1.836
3.741LeuLeu: 3.741 ± 1.297
0.0LeuMet: 0.0 ± 0.0
3.741LeuAsn: 3.741 ± 0.717
4.988LeuPro: 4.988 ± 0.883
3.741LeuGln: 3.741 ± 1.051
2.494LeuArg: 2.494 ± 0.684
4.988LeuSer: 4.988 ± 0.895
3.117LeuThr: 3.117 ± 1.528
1.247LeuVal: 1.247 ± 0.494
1.247LeuTrp: 1.247 ± 0.878
2.494LeuTyr: 2.494 ± 0.635
0.0LeuXaa: 0.0 ± 0.0
Met
3.117MetAla: 3.117 ± 1.338
0.0MetCys: 0.0 ± 0.0
1.247MetAsp: 1.247 ± 0.878
1.87MetGlu: 1.87 ± 1.18
0.0MetPhe: 0.0 ± 0.0
0.623MetGly: 0.623 ± 0.724
1.247MetHis: 1.247 ± 0.91
3.117MetIle: 3.117 ± 1.434
1.247MetLys: 1.247 ± 0.81
0.623MetLeu: 0.623 ± 0.439
0.623MetMet: 0.623 ± 0.439
0.623MetAsn: 0.623 ± 0.439
1.87MetPro: 1.87 ± 1.317
1.247MetGln: 1.247 ± 0.863
1.247MetArg: 1.247 ± 0.67
2.494MetSer: 2.494 ± 1.339
2.494MetThr: 2.494 ± 0.917
0.623MetVal: 0.623 ± 0.644
0.623MetTrp: 0.623 ± 0.439
1.247MetTyr: 1.247 ± 0.764
0.0MetXaa: 0.0 ± 0.0
Asn
3.117AsnAla: 3.117 ± 1.569
1.247AsnCys: 1.247 ± 0.927
0.623AsnAsp: 0.623 ± 0.735
3.117AsnGlu: 3.117 ± 0.55
2.494AsnPhe: 2.494 ± 1.412
6.234AsnGly: 6.234 ± 2.582
0.623AsnHis: 0.623 ± 0.439
3.117AsnIle: 3.117 ± 0.967
4.988AsnLys: 4.988 ± 1.309
8.105AsnLeu: 8.105 ± 1.193
0.623AsnMet: 0.623 ± 0.439
2.494AsnAsn: 2.494 ± 1.756
2.494AsnPro: 2.494 ± 1.591
2.494AsnGln: 2.494 ± 0.677
3.117AsnArg: 3.117 ± 1.23
2.494AsnSer: 2.494 ± 1.899
4.988AsnThr: 4.988 ± 1.26
2.494AsnVal: 2.494 ± 0.859
1.87AsnTrp: 1.87 ± 0.99
2.494AsnTyr: 2.494 ± 0.982
0.0AsnXaa: 0.0 ± 0.0
Pro
0.623ProAla: 0.623 ± 0.439
0.623ProCys: 0.623 ± 0.586
1.87ProAsp: 1.87 ± 0.778
3.117ProGlu: 3.117 ± 0.89
1.247ProPhe: 1.247 ± 0.707
1.87ProGly: 1.87 ± 1.317
1.87ProHis: 1.87 ± 1.05
5.611ProIle: 5.611 ± 1.414
0.0ProLys: 0.0 ± 0.0
4.988ProLeu: 4.988 ± 1.291
0.623ProMet: 0.623 ± 0.439
1.87ProAsn: 1.87 ± 1.317
0.623ProPro: 0.623 ± 0.586
2.494ProGln: 2.494 ± 1.352
1.247ProArg: 1.247 ± 0.494
0.623ProSer: 0.623 ± 0.724
1.247ProThr: 1.247 ± 0.494
3.741ProVal: 3.741 ± 2.166
0.0ProTrp: 0.0 ± 0.0
1.87ProTyr: 1.87 ± 0.715
0.0ProXaa: 0.0 ± 0.0
Gln
1.87GlnAla: 1.87 ± 0.644
1.247GlnCys: 1.247 ± 1.171
2.494GlnAsp: 2.494 ± 1.268
2.494GlnGlu: 2.494 ± 0.643
0.623GlnPhe: 0.623 ± 0.439
2.494GlnGly: 2.494 ± 0.917
0.0GlnHis: 0.0 ± 0.0
2.494GlnIle: 2.494 ± 0.684
4.364GlnLys: 4.364 ± 2.014
3.741GlnLeu: 3.741 ± 1.598
0.0GlnMet: 0.0 ± 0.0
0.623GlnAsn: 0.623 ± 0.735
2.494GlnPro: 2.494 ± 0.988
0.623GlnGln: 0.623 ± 0.439
4.364GlnArg: 4.364 ± 1.952
3.117GlnSer: 3.117 ± 1.633
4.364GlnThr: 4.364 ± 1.683
0.623GlnVal: 0.623 ± 0.439
0.0GlnTrp: 0.0 ± 0.0
1.87GlnTyr: 1.87 ± 0.558
0.0GlnXaa: 0.0 ± 0.0
Arg
4.988ArgAla: 4.988 ± 1.787
0.0ArgCys: 0.0 ± 0.0
3.117ArgAsp: 3.117 ± 1.104
3.741ArgGlu: 3.741 ± 0.717
1.247ArgPhe: 1.247 ± 1.099
3.117ArgGly: 3.117 ± 1.008
1.87ArgHis: 1.87 ± 0.99
3.741ArgIle: 3.741 ± 1.297
3.117ArgLys: 3.117 ± 1.421
3.117ArgLeu: 3.117 ± 0.89
1.247ArgMet: 1.247 ± 0.707
0.623ArgAsn: 0.623 ± 0.439
2.494ArgPro: 2.494 ± 0.631
1.87ArgGln: 1.87 ± 0.616
2.494ArgArg: 2.494 ± 1.727
3.117ArgSer: 3.117 ± 0.63
3.741ArgThr: 3.741 ± 0.988
3.117ArgVal: 3.117 ± 0.949
1.247ArgTrp: 1.247 ± 0.573
4.364ArgTyr: 4.364 ± 1.898
0.0ArgXaa: 0.0 ± 0.0
Ser
5.611SerAla: 5.611 ± 2.538
0.0SerCys: 0.0 ± 0.0
3.117SerAsp: 3.117 ± 0.89
4.988SerGlu: 4.988 ± 1.237
2.494SerPhe: 2.494 ± 0.643
4.988SerGly: 4.988 ± 2.227
0.0SerHis: 0.0 ± 0.0
4.988SerIle: 4.988 ± 2.405
4.364SerLys: 4.364 ± 1.196
4.364SerLeu: 4.364 ± 1.11
1.247SerMet: 1.247 ± 0.67
6.858SerAsn: 6.858 ± 1.467
0.623SerPro: 0.623 ± 0.644
1.247SerGln: 1.247 ± 0.707
4.988SerArg: 4.988 ± 1.137
3.741SerSer: 3.741 ± 1.754
4.988SerThr: 4.988 ± 1.737
2.494SerVal: 2.494 ± 1.097
0.623SerTrp: 0.623 ± 0.439
0.623SerTyr: 0.623 ± 0.586
0.0SerXaa: 0.0 ± 0.0
Thr
7.481ThrAla: 7.481 ± 1.745
0.0ThrCys: 0.0 ± 0.0
1.87ThrAsp: 1.87 ± 1.478
4.988ThrGlu: 4.988 ± 1.695
1.87ThrPhe: 1.87 ± 1.05
5.611ThrGly: 5.611 ± 1.561
1.87ThrHis: 1.87 ± 0.728
6.234ThrIle: 6.234 ± 1.608
4.364ThrLys: 4.364 ± 3.008
4.364ThrLeu: 4.364 ± 2.014
2.494ThrMet: 2.494 ± 0.631
3.117ThrAsn: 3.117 ± 0.835
3.117ThrPro: 3.117 ± 1.202
1.247ThrGln: 1.247 ± 0.803
2.494ThrArg: 2.494 ± 0.631
4.988ThrSer: 4.988 ± 1.737
1.87ThrThr: 1.87 ± 1.317
1.87ThrVal: 1.87 ± 0.746
0.0ThrTrp: 0.0 ± 0.0
3.741ThrTyr: 3.741 ± 0.723
0.0ThrXaa: 0.0 ± 0.0
Val
2.494ValAla: 2.494 ± 0.643
0.623ValCys: 0.623 ± 0.735
2.494ValAsp: 2.494 ± 0.684
5.611ValGlu: 5.611 ± 1.241
1.87ValPhe: 1.87 ± 0.819
1.87ValGly: 1.87 ± 0.925
0.0ValHis: 0.0 ± 0.0
1.87ValIle: 1.87 ± 0.85
2.494ValLys: 2.494 ± 1.55
4.988ValLeu: 4.988 ± 1.108
2.494ValMet: 2.494 ± 1.225
4.364ValAsn: 4.364 ± 1.343
1.87ValPro: 1.87 ± 0.985
0.623ValGln: 0.623 ± 0.439
1.87ValArg: 1.87 ± 0.778
3.117ValSer: 3.117 ± 1.657
3.741ValThr: 3.741 ± 1.457
0.623ValVal: 0.623 ± 0.439
0.0ValTrp: 0.0 ± 0.0
0.623ValTyr: 0.623 ± 0.439
0.0ValXaa: 0.0 ± 0.0
Trp
3.117TrpAla: 3.117 ± 1.135
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.247TrpGlu: 1.247 ± 0.494
0.0TrpPhe: 0.0 ± 0.0
1.247TrpGly: 1.247 ± 0.494
0.623TrpHis: 0.623 ± 0.439
0.623TrpIle: 0.623 ± 0.439
0.623TrpLys: 0.623 ± 0.439
0.0TrpLeu: 0.0 ± 0.0
0.623TrpMet: 0.623 ± 0.724
2.494TrpAsn: 2.494 ± 0.899
0.0TrpPro: 0.0 ± 0.0
2.494TrpGln: 2.494 ± 1.586
0.623TrpArg: 0.623 ± 0.723
1.87TrpSer: 1.87 ± 0.746
1.247TrpThr: 1.247 ± 0.67
0.623TrpVal: 0.623 ± 0.565
0.623TrpTrp: 0.623 ± 0.439
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.494TyrAla: 2.494 ± 1.207
0.623TyrCys: 0.623 ± 0.439
3.741TyrAsp: 3.741 ± 0.747
1.87TyrGlu: 1.87 ± 0.715
3.741TyrPhe: 3.741 ± 0.747
2.494TyrGly: 2.494 ± 1.505
0.623TyrHis: 0.623 ± 0.586
1.87TyrIle: 1.87 ± 0.85
3.117TyrLys: 3.117 ± 0.835
2.494TyrLeu: 2.494 ± 1.351
1.247TyrMet: 1.247 ± 0.843
3.741TyrAsn: 3.741 ± 2.006
1.247TyrPro: 1.247 ± 0.878
3.117TyrGln: 3.117 ± 0.949
1.247TyrArg: 1.247 ± 0.494
4.988TyrSer: 4.988 ± 1.629
3.117TyrThr: 3.117 ± 1.094
4.364TyrVal: 4.364 ± 1.634
0.0TyrTrp: 0.0 ± 0.0
3.741TyrTyr: 3.741 ± 1.522
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1605 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski