Anas platyrhynchos (Mallard) (Anas boschas)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda;

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16592 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R0L6Z3|R0L6Z3_ANAPL Peripheral-type benzodiazepine receptor-associated protein 1 OS=Anas platyrhynchos OX=8839 GN=Anapl_03863 PE=4 SV=1
MM1 pKa = 7.46TSGDD5 pKa = 3.86GLDD8 pKa = 3.56SRR10 pKa = 11.84SAAEE14 pKa = 4.25LRR16 pKa = 11.84LDD18 pKa = 4.19SLYY21 pKa = 10.25LQCMDD26 pKa = 3.14SHH28 pKa = 6.3EE29 pKa = 4.61ADD31 pKa = 3.43VAGALPKK38 pKa = 10.28QEE40 pKa = 4.08IQSSSEE46 pKa = 3.95CQAAASDD53 pKa = 4.27AEE55 pKa = 4.35VLRR58 pKa = 11.84PAKK61 pKa = 10.27AISEE65 pKa = 4.61PYY67 pKa = 6.41TTPKK71 pKa = 10.26IPLSANAPGTDD82 pKa = 3.48ADD84 pKa = 3.91STEE87 pKa = 4.59CEE89 pKa = 4.2VGLADD94 pKa = 5.55AYY96 pKa = 11.12LSPTADD102 pKa = 3.11SCEE105 pKa = 4.03NTTLSPADD113 pKa = 4.0KK114 pKa = 10.99GDD116 pKa = 3.62IPHH119 pKa = 6.88SIVYY123 pKa = 10.0QNEE126 pKa = 3.61EE127 pKa = 4.41GKK129 pKa = 9.57WVTDD133 pKa = 3.51LAYY136 pKa = 9.07YY137 pKa = 10.17TSFDD141 pKa = 3.77EE142 pKa = 4.89EE143 pKa = 3.94QDD145 pKa = 3.72LNLAEE150 pKa = 5.11DD151 pKa = 4.21DD152 pKa = 5.41KK153 pKa = 11.41IDD155 pKa = 3.94EE156 pKa = 4.7DD157 pKa = 5.51FITT160 pKa = 4.32

Molecular weight: 17.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R0L4W6|R0L4W6_ANAPL Uncharacterized protein OS=Anas platyrhynchos OX=8839 GN=Anapl_16233 PE=4 SV=1
LL1 pKa = 7.39AGPTASTAVSVVPVGVRR18 pKa = 11.84AAIARR23 pKa = 11.84TKK25 pKa = 10.58GSTIARR31 pKa = 11.84QAPVAQGGASIARR44 pKa = 11.84QAPVAQGRR52 pKa = 11.84APRR55 pKa = 11.84AIQTPVAQGRR65 pKa = 11.84AA66 pKa = 3.52

Molecular weight: 6.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16574

18

16592

6979335

19

32970

420.6

46.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.856 ± 0.018

2.476 ± 0.016

4.677 ± 0.015

6.859 ± 0.03

3.747 ± 0.017

6.124 ± 0.026

2.654 ± 0.012

4.64 ± 0.017

6.17 ± 0.024

9.704 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.157 ± 0.009

3.915 ± 0.014

5.627 ± 0.024

4.863 ± 0.024

5.385 ± 0.018

8.449 ± 0.027

5.489 ± 0.018

6.105 ± 0.024

1.253 ± 0.006

2.734 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski